{
 "claims": [
  {
   "claim": "Standard errors from the studies' original variance estimators are on average about half as large as DCRSEs (equivalently DCRSEs are about twice as large); the inverse-study-frequency-weighted (ISFW) average standard error ratio is 1.74.",
   "claim_id": "P032-H1",
   "related_corrections": [
    "P032-N004",
    "P032-E004",
    "P032-E008",
    "P032-N007"
   ],
   "tied_to": "Abstract; pp. 187, 193, 196; Table 5 row 'All'; Supplementary Table A.2; Figure 1"
  },
  {
   "claim": "Most (67%, 'two-thirds') of the statistically significant key explanatory variable estimates remain significant at the 5% level with DCRSEs.",
   "claim_id": "P032-H2",
   "related_corrections": [
    "P032-N004",
    "P032-E004",
    "P032-E008"
   ],
   "tied_to": "Abstract; pp. 187, 196; Table 5 row 'All' (0.46 and 0.22); Supplementary Table A.2 last row (0.455, 0.224); Figures 2-3"
  },
  {
   "claim": "The ISFW proportion of KEVs going from significant to insignificant is 0.22, and a small proportion (0.05) go from insignificant to significant, which the paper attributes to sampling variability of the standard error estimators.",
   "claim_id": "P032-H3",
   "related_corrections": [],
   "tied_to": "p. 193; Table 5 row 'All'"
  },
  {
   "claim": "No subfield is immune: every subfield has an average SER above 1.5 and at least 19% of estimates losing significance; in IOs/International Law DCRSEs are on average more than twice the original SEs and 34% of estimates become insignificant.",
   "claim_id": "P032-H4",
   "related_corrections": [
    "P032-N004"
   ],
   "tied_to": "pp. 193, 196; Table 5 subfield rows"
  },
  {
   "claim": "Study-level average SERs range from 0.90 to 4.16; 18 of 22 studies are less precise with DCRSEs; only 7 of 22 lose no significant KEV; three studies see half or more of their KEVs become insignificant.",
   "claim_id": "P032-H5",
   "related_corrections": [
    "P032-E002",
    "P032-N004"
   ],
   "tied_to": "p. 196; Supplementary Table A.2"
  },
  {
   "claim": "The reanalysis covers all International Organization articles from January 2014 to January 2020 with dyadic data that meet the inclusion rules: 22 studies, 174 models, 691 KEVs; 24 models in three studies used no robust or clustered SE; three studies have a model with fixed effects for both dyad members; 20 studies use state dyads and 2 use IO dyads.",
   "claim_id": "P032-H6",
   "related_corrections": [
    "P032-E009",
    "P032-E008",
    "P032-N006",
    "P032-N011"
   ],
   "tied_to": "p. 192 and footnotes 8-10; Supplementary Tables A.1, A.3, A.4"
  },
  {
   "claim": "The DCR variance estimator can be computed as $\\hat V_r=\\sum_i\\hat V_{c,i}-\\hat V_D-(N-2)\\hat V_0$, using member-specific clustered, repeated-dyad clustered and heteroskedasticity-consistent estimators. The R and Stata packages implement DCRSEs for the models in the reanalysis.",
   "claim_id": "P032-H7",
   "related_corrections": [
    "P032-N004",
    "P032-E004",
    "P032-E005",
    "P032-E006",
    "P032-N005",
    "P032-N003",
    "P032-N010",
    "P032-N012"
   ],
   "tied_to": "Section 3 display (p. 191); abstract; pp. 187, 196; Data Availability Statement; supplement p. A1; packages dcr (R) and dcr (Stata)"
  },
  {
   "claim": "Repeating the reanalysis with a small-sample correction gives no substantive differences from the primary reanalysis.",
   "claim_id": "P032-H8",
   "related_corrections": [
    "P032-E011"
   ],
   "tied_to": "Footnote 12, p. 193; Supplementary Table A.5"
  },
  {
   "claim": "Dyads sharing a member can be dependent in ways that clustering only on repeated dyads misses. In the additive example, ignoring this dependence understates the variance of the average of two dyadic outcomes by $(ac/2)\\operatorname{Var}(X_{US})$ when $a$ and $c$ have the same sign.",
   "claim_id": "P032-H9",
   "related_corrections": [
    "P032-N003"
   ],
   "tied_to": "Section 2.1 displays (pp. 188-189); Table 1; Tables 2-4"
  },
  {
   "claim": "The reanalysis supplies a lower bound on the consequences of inadequate clustering because dependence between non-incident dyads further increases uncertainty.",
   "claim_id": "P032-H10",
   "related_corrections": [
    "P032-E001"
   ],
   "tied_to": "pp. 187, 191, 196; Section 3 sandwich variance expression and Table 4 dependence restriction"
  },
  {
   "claim": "Failure to account for dyadic clustering has not apparently produced systematically false substantive conclusions, although it substantially overstates precision.",
   "claim_id": "P032-H11",
   "related_corrections": [],
   "tied_to": "Conclusion, p. 196; Table 5; Table A.2; Figures 2-3"
  }
 ],
 "date_published": "2026-10-25",
 "findings": [
  {
   "before_review": null,
   "class": "error",
   "date_modified": "2026-10-25",
   "date_published": "2026-10-25",
   "evidence_type": "exact_counterexample",
   "exhibits": [
    {
     "alt": "A paragraph of ten lines from the Introduction. A red box in the fourth line surrounds the words 'DCRSEs will still underestimate uncertainty'. A second red box at the end of the seventh line surrounds 'a lower bound', in the sentence 'The reanalysis we present therefore offers a lower bound on the severity of the consequences of inadequate clustering practices in previous research'.",
     "caption": "Introduction, paragraph beginning “Note, however”, p. 187 (PDF p. 2). The marks are on the statement that DCRSEs “will still underestimate uncertainty” and on “a lower bound”.",
     "url": "https://pmaronow.github.io/llm-audit/works/P032/exhibits/P032-E001.png"
    },
    {
     "alt": "Two groups of lines from one paragraph, separated by a dashed grey rule. In the first group a red box surrounds 'still improve' in the sentence 'DCRSEs are not sufficient, although still improve over the naive approach or clustering by repeated dyad approach, when there are interdependencies throughout the entire system'. In the second group a red box surrounds 'we expect the variance of least squares estimates to be larger', which follows 'Aronow et al. (2018) developed conservative estimators for the variance of least squares estimators in such cases where there is further dependence, and in such cases'.",
     "caption": "Section 3, paragraph beginning “Note that the above approach”, p. 191 (PDF p. 6): its first four lines and its last six, with the four lines between them left out at the dashed rule. The marks are on “still improve” and on the expectation of a larger variance.",
     "url": "https://pmaronow.github.io/llm-audit/works/P032/exhibits/P032-E001-p191.png"
    },
    {
     "alt": "The six lines of the first paragraph of the Conclusion. A red box in the fifth line surrounds 'a lower bound', in the phrase 'thereby revealing a lower bound on the severity of the consequences of inadequate clustering practices in previous quantitative dyadic research'.",
     "caption": "Conclusion, first paragraph, p. 196 (PDF p. 11). The mark is on “a lower bound”.",
     "url": "https://pmaronow.github.io/llm-audit/works/P032/exhibits/P032-E001-p196.png"
    },
    {
     "alt": "A line chart. The horizontal axis is the number of independent blocks of dyads, m, from 1 to 100 on a logarithmic scale. The vertical axis is the expected DCR variance estimate divided by the true variance, from 0.5 to 1.8. A horizontal line at 1 is labelled 'ratio 1: the estimate equals the true variance on average', and the region below it is shaded and labelled 'below 1: uncertainty is underestimated, the direction stated on p. 187'. A blue curve with circles, labelled 'Example 4: six dyads among four members', starts at 2/3 for m = 1, crosses 1 before m = 2, where it is 13/12, passes 17/12 at m = 10 and approaches a dashed line labelled 'limit 3/2'. An orange curve with squares, labelled 'Example 5: dyads (A,B), (A,C), (D,E), (D,F)', starts at 7/6 for m = 1, is 17/12 at m = 2 and approaches a dashed line labelled 'limit 5/3'. The title reads 'Negative dependence between non-incident dyads: the DCR variance estimate settles above the true variance in both examples'.",
     "caption": "Expected value of the DCR variance estimator, without a small-sample correction, divided by the true variance of the estimated intercept, for $m$ independent blocks of Example 4 (circles, curve $3/2-5/(6m)$) and of Example 5 (squares, curve $(10m-3)/(6m)$). The markers are the values computed exactly for $m=1,2,10$ and for $m=1,2$, and the dashed lines are the limits $3/2$ and $5/3$. A ratio above 1 means that the DCR variance estimate is too large on average; both limits contradict the unconditional underestimation claim on p. 187.",
     "url": "https://pmaronow.github.io/llm-audit/works/P032/exhibits/P032-E001-dcr-ratio.png"
    }
   ],
   "formal_release": null,
   "formal_statements": [
    {
     "id": "P032-T1",
     "url": "https://pmaronow.github.io/llm-audit/works/P032/#P032-T1"
    },
    {
     "id": "P032-T2",
     "url": "https://pmaronow.github.io/llm-audit/works/P032/#P032-T2"
    },
    {
     "id": "P032-T5",
     "url": "https://pmaronow.github.io/llm-audit/works/P032/#P032-T5"
    }
   ],
   "headline": "Under dependence between non-incident dyads, DCRSEs can overstate uncertainty as well as understate it, and the reanalysis is a lower bound on the consequences of inadequate clustering only under a sign condition that the article does not state.",
   "id": "P032-E001",
   "location": "Introduction, paragraph beginning “Note, however”, p. 187 (PDF p. 2); Section 3, paragraph beginning “Note that the above approach”, p. 191 (PDF p. 6); Conclusion, first paragraph, p. 196 (PDF p. 11)",
   "pdf_page": 2,
   "printed_page": "187",
   "reaches": [
    {
     "effect": "same_error_restated",
     "effect_text": "a corresponding statement is printed there",
     "explanation": null,
     "package": null,
     "recorded_as": null,
     "to": "work",
     "url": "https://pmaronow.github.io/llm-audit/works/P018/",
     "where": null,
     "work_id": "P018"
    }
   ],
   "related_entries": [],
   "revisions": [],
   "same_defect_as": [],
   "severity": "Moderate",
   "subject": "paper",
   "target_ids": [
    "P032-T1",
    "P032-T2",
    "P032-T5"
   ],
   "text": {
    "as_printed": "\\emph{Page 187.} When there is dependence between non-incident dyads (i.e., dyads that do not share a common member), DCRSEs \\hl{will still underestimate} uncertainty, just as only clustering on repeated dyads \\hl{underestimates} uncertainty when there is dependence across incident dyads. DCRSEs should therefore not be considered a replacement for approaches to clustering that (appropriately) account for greater amounts of dependence in the data. The reanalysis we present therefore offers \\hl{a lower bound} on the severity of the consequences of inadequate clustering practices in previous research, or, in other words, reveals the extent to which dyadic clustering \\emph{alone} is jeopardizing the reliability of research.\n\n\\emph{Page 191.} DCRSEs are \\emph{not} sufficient---although \\hl{still improve} over the naive approach or clustering by repeated dyad approach---when there are interdependencies throughout the entire system (i.e., across non-incident dyads). \\ldots\\ Aronow \\emph{et al.} (2018) developed conservative estimators for the variance of least squares estimators in such cases where there is further dependence---and in such cases \\hl{we expect the variance of least squares estimates to be larger} than those that only take into account dyadic clustering.\n\n\\emph{Page 196.} We investigated the consequences of failing to account for dyadic clustering in previous empirical research by reanalyzing all quantitative dyadic analyses in \\emph{International Organization} published in a 6-year window, thereby revealing \\hl{a lower bound} on the severity of the consequences of inadequate clustering practices in previous quantitative dyadic research.",
    "corrected": "\\emph{Page 187.} When there is dependence between non-incident dyads (i.e., dyads that do not share a common member), DCRSEs \\hl{may} still underestimate uncertainty, just as only clustering on repeated dyads \\hl{may underestimate} uncertainty when there is dependence across incident dyads. \\hl{Non-incident dependence can also lower the sampling variance of a coefficient relative to the population dyadic sandwich value, so DCRSEs can overestimate uncertainty.} DCRSEs should therefore not be considered a replacement for approaches to clustering that (appropriately) account for greater amounts of dependence in the data. The reanalysis \\hl{compares DCRSEs with the standard errors from the original variance estimation strategies and documents the resulting changes in standard errors and statistical significance}.\n\n\\emph{The condition.} Let $X$ be a fixed $n\\times p$ design matrix of full column rank, let $Y=X\\beta+u$ with $\\mathbb{E}[u]=0$ and $\\mathbb{E}[uu^T]=\\Omega$, and let $\\widehat\\beta$ be the least squares estimator. Fix $c\\in\\mathbb{R}^p$ and set $h=X(X^TX)^{-1}c$. Let $d_r$ be the dyad of observation $r$, and let $\\Omega_D$ have entries $(\\Omega_D)_{rs}=\\Omega_{rs}$ if $d_r\\cap d_s\\neq\\varnothing$ and $(\\Omega_D)_{rs}=0$ otherwise. Then\n\\[\n\\operatorname{Var}(c^T\\widehat\\beta)-h^T\\Omega_Dh=\\sum_{(r,s):\\,d_r\\cap d_s=\\varnothing}h_rh_s\\Omega_{rs},\n\\]\nwhere the sum is over ordered pairs of observations. \\hl{If this sum is nonnegative}, then $h^T\\Omega_Dh\\le\\operatorname{Var}(c^T\\widehat\\beta)$. If it is positive, the inequality is strict. If it is negative, then $h^T\\Omega_Dh>\\operatorname{Var}(c^T\\widehat\\beta)$. The statement compares the variance of $c^T\\widehat\\beta$ with the population dyadic sandwich value. It does not order the estimates computed from residuals in every sample.\n\n\\emph{Page 191.} DCRSEs are \\emph{not} sufficient when there are interdependencies throughout the entire system (i.e., across non-incident dyads)\\hl{, and an improvement over the naive approach or clustering by repeated dyad approach is not guaranteed}. \\ldots\\ Aronow \\emph{et al.} (2018) developed conservative estimators for the variance of least squares estimators in such cases where there is further dependence---and in such cases the variance of least squares estimates \\hl{is larger than the population dyadic sandwich value when the sum above is positive for the coefficient, and smaller when it is negative}.\n\n\\emph{Page 196.} \\ldots\\ by reanalyzing all quantitative dyadic analyses in \\emph{International Organization} published in a 6-year window, thereby \\hl{documenting how standard errors and statistical significance change when DCRSEs are used. Without a justified sign for each coefficient's omitted weighted covariance sum, the reanalysis is not a lower bound on the consequences of all inadequately modeled dependence}.",
    "evidence": "The evidence is a derivation and six exact examples. Let $X$ be a fixed $n\\times p$ matrix of full column rank, and let $Y=X\\beta+u$ with $\\mathbb{E}[u]=0$ and $\\mathbb{E}[uu^T]=\\Omega$. Fix $c\\in\\mathbb{R}^p$ and set $h=X(X^TX)^{-1}c$. Since $\\widehat\\beta-\\beta=(X^TX)^{-1}X^Tu$, I have $c^T\\widehat\\beta-c^T\\beta=h^Tu$, and the true variance is $V=\\operatorname{Var}(c^T\\widehat\\beta)=h^T\\Omega h$. Let $d_r$ denote the dyad of observation $r$, and let $\\Omega_D$ impose the restriction of Table 4, with entries $(\\Omega_D)_{rs}=\\Omega_{rs}$ if $d_r\\cap d_s\\neq\\varnothing$ and $(\\Omega_D)_{rs}=0$ otherwise. The population dyadic sandwich value is $V_D=h^T\\Omega_Dh$. Subtracting, I obtain\n\\[\nV-V_D=h^T(\\Omega-\\Omega_D)h=\\sum_{(r,s):\\,d_r\\cap d_s=\\varnothing}h_rh_s\\Omega_{rs},\n\\]\nwhere the sum is over ordered pairs of observations. I denote this sum by $\\Delta$. This identity implies that $V_D\\le V$ if and only if $\\Delta\\ge0$. Note that positive definiteness of $\\Omega$ does not restrict the sign of $\\Delta$.\n\nExamples 1 to 3 have two observations, on two dyads with no common member. In Examples 1 and 3 the coefficient is the intercept, with $h=(1/2,1/2)^T$. In Example 2 it is the slope on the single regressor $x=(-1,1)^T$, with $h=(-1/2,1/2)^T$. Example 4 has one observation on each of the six dyads among four members, and Examples 5 and 6 have one observation on each of the dyads $(A,B)$, $(A,C)$, $(D,E)$ and $(D,F)$. In Examples 4 to 6 the coefficient is the intercept. Every error has variance 1. In Examples 1 to 5 the matrix $\\Omega$ is positive definite, and in Example 6 it is the covariance matrix of an explicit distribution.\n\n\\begin{audittable}{llrrr}{The true variance $V$, the variance $V_D$ with the covariances of non-incident dyads set to zero, and $\\Delta=V-V_D$.}\nExample & Covariances between observations & $V$ & $V_D$ & $\\Delta$ \\\\\n1 & non-incident $-1/2$ & $1/4$ & $1/2$ & $-1/4$ \\\\\n2 & non-incident $1/2$ & $1/4$ & $1/2$ & $-1/4$ \\\\\n3 & non-incident $1/2$ & $3/4$ & $1/2$ & $1/4$ \\\\\n4 & incident $1/8$, non-incident $-1/2$ & $1/6$ & $1/4$ & $-1/12$ \\\\\n5 & incident $1/4$, non-incident $-1/4$ & $3/16$ & $5/16$ & $-1/8$ \\\\\n6 & incident $1/4$, non-incident $1/4$ & $7/16$ & $5/16$ & $1/8$ \\\\\n\\end{audittable}\n\nExamples 1, 2, 4 and 5 have $V<V_D$. Example 2 has a positive covariance between the two errors, and Examples 4 and 5 have positive dependence between incident dyads. Examples 3 and 6 show that the other direction also occurs.\n\nThe fitted estimator also overstates variance in the limit. In Example 4 the errors can be built from independent signs and are bounded. For $m$ independent copies of this block on disjoint members, I have $n=6m$ and $V=1/n$, and the DCR variance estimator, computed from residuals without a small-sample correction, has expectation $3/(2n)-5/n^2$. The ratio of this expectation to $V$ is $3/2-5/n$, which equals $2/3$ for $m=1$, $13/12$ for $m=2$ and $17/12$ for $m=10$. By the law of large numbers, the ratio of the estimator to $V$ converges to $3/2$. For $m$ independent copies of Example 5, I have $V=3/(16m)$, and the estimator has expectation $(10m-3)/(32m^2)$, which exceeds $V$ for every $m\\ge1$. The ratio of the estimator to $V$ converges in probability to $5/3$. In the limit, DCRSEs exceed the standard deviation of the estimate by the factors $\\sqrt{3/2}$ and $\\sqrt{5/3}$. In Example 4 the variance with every covariance between distinct observations set to zero, as under the naive approach, equals $V$. In Example 5 it is $1/4$, which lies between $V=3/16$ and $V_D=5/16$.",
    "problem": "The passage on p.~187 states a direction: when non-incident dyads are dependent, DCRSEs underestimate uncertainty. From this direction the article infers that its reanalysis is a lower bound on the consequences of inadequate clustering, and the Conclusion repeats the inference. The direction does not hold in general. The DCR variance estimator treats as zero the covariances between observations whose dyads share no member. In the variance of an estimated coefficient, each omitted covariance is weighted by the product of the weights of its two observations, and the sum of these weighted terms can be positive, zero or negative. When the sum is negative, the true variance of the estimated coefficient is smaller than the population dyadic sandwich value, and DCRSEs can overstate uncertainty. The article states no condition on the sign of the sum. The condition in Section 2.1, that $a$ and $c$ are of the same sign, belongs to the toy example. A positive covariance between the errors of non-incident dyads is also not enough, since the weights of two observations in a slope can have opposite signs. Without a sign condition, the comparison of DCRSEs with the original standard errors measures the effect of dyadic clustering and bounds the effect of further dependence in neither direction. The expectation of a larger variance on p.~191 requires a positive omitted weighted covariance sum; the aside there that DCRSEs still improve over the naive approach is not guaranteed.",
    "what_survives": "The toy example of Section 2.1 with its condition on the signs of $a$ and $c$, the sandwich identity, the restriction of Table 4 and the decomposition on p.~191 are unaffected. The ratios of DCRSEs to the original standard errors, the comparisons of $p$-values and the software do not use the direction of the omitted dependence, and this finding changes none of them. I have not independently recalculated those reported values. The sentence in the third paragraph of the Conclusion, that the problem ``may be even more severe'', is correct as a statement of possibility (Examples 3 and 6). What changes is the interpretation. The reanalysis is not shown to be a lower bound. A population variance lower bound requires $\\Delta\\ge0$ for each coefficient, which has not been examined for the 22 studies. The result of Aronow, Crawford and Zubizarreta (2018) cited on p.~191 is not in question."
   },
   "url": "https://pmaronow.github.io/llm-audit/works/P032/#P032-E001",
   "work": {
    "arxiv_id": "2109.03774",
    "doi": "10.1017/pan.2023.26",
    "title": "Dyadic Clustering in International Relations",
    "url": "https://pmaronow.github.io/llm-audit/works/P032/"
   },
   "work_id": "P032"
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  {
   "before_review": null,
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   "date_modified": "2026-10-25",
   "date_published": "2026-10-25",
   "evidence_type": "historical_lean_attribution",
   "exhibits": [
    {
     "alt": "Crop of the paragraph that begins For individual studies, showing six complete lines and part of the next. A red outline marks the sentence: Three studies see half or more of their KEVs become insignificant at the 5 percent level upon reanalysis.",
     "caption": "p. 196 (PDF p. 11), Section 4.1, paragraph beginning “For individual studies”. The marked sentence gives the count as three.",
     "url": "https://pmaronow.github.io/llm-audit/works/P032/exhibits/P032-E002.png"
    },
    {
     "alt": "Crop of Table A.2 with one row per study. Red outlines mark the study names Colgan (2014), Efrat and Newman (2016), Fang, Johnson, and Leeds (2014) and Weisiger (2016), and their entries 0.889, 0.5, 1 and 0.607 in the column Sig. to Insig. Two further red outlines mark the word defering in the rows for Efrat and Newman (2016) and Pratt (2018).",
     "caption": "Supplementary Appendix, p. A3 (PDF p. 3), Table A.2, columns “Study” to “Sig.$\\to$Insig.”. The four studies with an entry of $0.5$ or more are marked, with their entries $0.889$, $0.5$, $1$ and $0.607$, and so is the word “defering” in two rows.",
     "url": "https://pmaronow.github.io/llm-audit/works/P032/exhibits/P032-E002-tableA2.png"
    }
   ],
   "formal_release": null,
   "formal_statements": [
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     "id": "P032-T10",
     "url": "https://pmaronow.github.io/llm-audit/works/P032/#P032-T10"
    }
   ],
   "headline": "Four studies, not three, lose significance in half or more of their KEVs, and “deferring” is misspelled twice in Supplementary Table A.2.",
   "historical_evidence_type": "lean_proof",
   "id": "P032-E002",
   "location": "Section 4.1, p. 196 (PDF p. 11), paragraph beginning “For individual studies”; Supplementary Table A.2, Supplementary Appendix p. A3 (PDF p. 3), entries for Efrat and Newman (2016) and Pratt (2018)",
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   "printed_page": "196",
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   "severity": "Minor",
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   "text": {
    "as_printed": "\\emph{p.~196.} \\hl{Three} studies see half or more of their KEVs become insignificant at the 5\\% level upon reanalysis.\n\n\\emph{Table A.2, column ``Primary Relationship Tested''.} Efrat and Newman (2016): Likelihood of \\hl{defering} to another country's laws. Pratt (2018): Likelihood of \\hl{defering} to another IO.",
    "corrected": "\\emph{p.~196.} \\hl{Four} studies see half or more of their KEVs become insignificant at the 5\\% level upon reanalysis.\n\n\\emph{Table A.2.} Efrat and Newman (2016): Likelihood of \\hl{deferring} to another country's laws. Pratt (2018): Likelihood of \\hl{deferring} to another IO.\n\nAlternatively, the sentence on p.~196 keeps ``Three'' and reads ``more than half'' in place of ``half or more''.",
    "evidence": "The evidence is a recount from the column Sig.$\\to$Insig.\\ of Table A.2, where every other study is at $0.375$ or below. The four counts agree with the saved model outputs in the replication files. The spelling is a check of the page.",
    "problem": "Supplementary Table A.2 lists four studies in which the share of KEVs that go from significant to insignificant is one half or more: Colgan (2014) with $8/9$, Efrat and Newman (2016) with $2/4$, Fang, Johnson, and Leeds (2014) with $1/1$ and Weisiger (2016) with $17/28$. Three of them are strictly above one half.",
    "what_survives": "The numerical entries of Table A.2 and every aggregate are unchanged. The neighbouring counts in the paragraph, $18$ of $22$ studies with an average SER above one and $7$ of $22$ that lose no significance, agree with the table."
   },
   "url": "https://pmaronow.github.io/llm-audit/works/P032/#P032-E002",
   "work": {
    "arxiv_id": "2109.03774",
    "doi": "10.1017/pan.2023.26",
    "title": "Dyadic Clustering in International Relations",
    "url": "https://pmaronow.github.io/llm-audit/works/P032/"
   },
   "work_id": "P032"
  },
  {
   "before_review": null,
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   "date_modified": "2026-10-25",
   "date_published": "2026-10-25",
   "evidence_type": "exact_counterexample",
   "exhibits": [
    {
     "alt": "Crop of six lines of page 193, from 'To quantify the impact of neglecting dyadic clustering'. Two red boxes mark the words 'the standard error produced using the original variance estimation strategy', which run over two lines and end with the footnote mark 13.",
     "caption": "Section 4.1, p. 193 (PDF p. 8). The marked words define the denominator of the SER. For seven KEVs the command exports a standard error from the default variance of the estimation command, while the original studies used a robust one. The definition is correct as printed.",
     "url": "https://pmaronow.github.io/llm-audit/works/P032/exhibits/P032-E004.png"
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   ],
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   "headline": "In the Stata command, the branch that should fit the comparison model with a robust variance when rse is requested tests crse a second time and can never run; for seven KEVs in three models of Kinne (2018) and Weisiger (2016), the comparison standard error, its $p$-value and the denominator of the SER then come from the default variance of the estimation command and not from the robust variance of the original study, and line 321 should test rse.",
   "id": "P032-E004",
   "location": "Section 4.1, p. 193 (PDF p. 8), definition of the standard error ratio. Stata package dcr (commit 734ee6a) and its identical copy in the replication files: dcr.ado, lines 310–334, and the help entry for rse; calls on lines 352, 381 and 1199 of the replication script 1_reanalysis_stata.do. The code is not printed in the article.",
   "pdf_page": 8,
   "printed_page": "193",
   "reaches": [],
   "related_entries": [],
   "revisions": [],
   "same_defect_as": [],
   "severity": "Moderate",
   "subject": "paper",
   "target_ids": [],
   "text": {
    "as_printed": "P.~193: ``We compute a standard error ratio (SER) for all KEVs, which is the DCRSE divided by the standard error produced using the original variance estimation strategy.${}^{13}$''\n\nStata help: ``\\texttt{rse} specifies that a robust standard error (RSE) should be computed in addition to a DCRSE, e.g., for the purpose of calculating the ratio of DCRSE to RSE. This RSE is only output to the Excel spreadsheet created by \\texttt{xlsxpath}.''\n\n\\texttt{dcr.ado}, line 310 and lines 320--334. Lines 311--319 hold the three clustered fits of the first branch, omitted here.\n\n\\texttt{if (\"`crse'\"!=\"\") \\{}\n\n\\texttt{\\}}\n\n\\texttt{else if (\"\\hl{`crse'}\"!=\"\") \\{}\n\n\\texttt{if \"`syntax'\" == \"vce\" \\{}\n\n\\texttt{qui `prefix' `command\\_line' if `touse' `weight', `options' vce(robust)}\n\n\\texttt{\\}}\n\n\\texttt{if \"`syntax'\" == \"clusterOnly\" \\{}\n\n\\texttt{qui `prefix' `command\\_line' if `touse' `weight', `options'}\n\n\\texttt{\\}}\n\n\\texttt{if \"`syntax'\" == \"robustCluster\" \\{}\n\n\\texttt{qui `prefix' `command\\_line' if `touse' `weight', `options' robust}\n\n\\texttt{\\}}\n\n\\texttt{\\}}\n\n\\texttt{else \\{}\n\n\\texttt{qui `prefix' `command\\_line' if `touse' `weight', `options'}\n\n\\texttt{\\}}",
    "corrected": "\\texttt{dcr.ado}, line 321, with the three fits on lines 322--330 kept:\n\n\\texttt{else if (\"\\hl{`rse'}\"!=\"\") \\{}\n\nAfter this change, I would refit the comparison models of Kinne (2018), Figure 8, Model 1 and of Weisiger (2016), Table 3, Model 1 and Table 4, Model 1 in the primary and in the small-sample scripts, and regenerate the comparison standard errors, the $p$-values, the SERs and the tables and figures that use them. I give no corrected values, since they require these fits.",
    "evidence": "I checked the code and computed two exact examples. In \\texttt{dcr.ado} the word \\texttt{rse} occurs only on line 16, where the option is declared, and on line 36, where it is removed from the options passed to the estimation command. Lines 310 and 321 carry the same test.\n\nIn the example, $y=(0,0,1,3)$ is regressed on an intercept and $x=(-1,0,0,1)$, the four dyads share no member, and the command is called with \\texttt{rse} and \\texttt{dofundo(reglike)}. Then $\\widehat\\beta=(1,\\,3/2)$, the residuals are $(1/2,-1,0,1/2)$, and the three variance matrices are diagonal.\n\n\\begin{audittable}{lrr}{The exact example: the slope, as the command exports it and as \\texttt{rse} requests it.}\nQuantity & As exported & With the robust comparison \\\\\nComparison variance of the slope & $3/8$ (default) & $1/4$ (robust) \\\\\nDCR variance of the slope & $1/8$ & $1/8$ \\\\\nSquared SER & $1/3$ & $1/2$ \\\\\nSquared $z$ statistic of the comparison fit & $6$ & $9$ \\\\\n\\end{audittable}\n\nA second exact example is a logit model on the fifteen dyads among six members. Its slope has default variance $47/84$, robust variance $2045/5488$ and DCR variance $195/392$. The squared SER is $585/658<1$ as exported and $546/409>1$ with the robust comparison. In this example the defect moves the ratio from one side of one to the other.\n\nI computed both examples from the formulas of the command and of the estimation commands; I did not run Stata. The seven KEVs are listed below with the values that the command exported. They are not corrected values. I did not fit the three models again.\n\n\\begin{audittable}{llrrr}{The seven KEVs whose comparison standard error comes from the default variance: saved values of the primary reanalysis.}\nModel & KEV & Comparison SE & DCRSE & SER \\\\\nKinne (2018), Figure 8, Model 1 & \\texttt{l\\_DCA2paths} & 0.0682 & 0.0960 & 1.407 \\\\\nKinne (2018), Figure 8, Model 1 & \\texttt{l\\_DCAdegree} & 0.0664 & 0.1505 & 2.267 \\\\\nWeisiger (2016), Table 3, Model 1 & \\texttt{lndeadpop} & 0.0906 & 0.7135 & 7.872 \\\\\nWeisiger (2016), Table 3, Model 1 & \\texttt{pcturnsum} & 0.7262 & 1.4858 & 2.046 \\\\\nWeisiger (2016), Table 4, Model 1 & \\texttt{lndeadpop} & 0.0913 & 0.6853 & 7.505 \\\\\nWeisiger (2016), Table 4, Model 1 & \\texttt{pcncsum} & 0.9749 & 1.1480 & 1.178 \\\\\nWeisiger (2016), Table 4, Model 1 & \\texttt{pcnewcsum} & 1.1052 & 1.5973 & 1.445 \\\\\n\\end{audittable}",
    "problem": "Beside the DCRSE, the command exports a comparison standard error from a second fit of the model, and the ratio of the two is the SER of the reanalysis. Three branches choose the second fit. The first runs when \\texttt{crse} is given and clusters on the named variable. The second is meant to run when \\texttt{rse} is given and to use the robust variance of the estimation command. Its condition repeats that of the first. The branch is reached only when \\texttt{crse} is empty and entered only when \\texttt{crse} is not empty, which cannot happen. No other line tests \\texttt{rse}. A call with \\texttt{rse} and without \\texttt{crse} then falls to the third branch, which fits the model without adding a variance option. For the reanalysis calls, the comparison standard error, its $p$-value and the SER are then computed from the default variance of the estimation command. The reanalysis has nine such calls. Six are \\texttt{stcrreg} models, whose default variance is already robust, and for them the defect need not change anything. Three are models whose default variance is not robust and whose original fit asked for a robust one: the \\texttt{logit} model of Kinne (2018), Figure 8, Model 1, and the \\texttt{stcox} models of Weisiger (2016), Table 3, Model 1 and Table 4, Model 1. Their seven KEVs, two of the six of Kinne and five of the 28 of Weisiger, are compared with a standard error that does not come from the original variance estimation strategy.",
    "what_survives": "The definition of the SER on p.~193 is correct. The DCR variance is computed before this block and is unchanged by this repair, as are the coefficients, the DCRSEs and the $p$-values based on them. The R package, the calls with \\texttt{crse} and the calls with neither option are not affected. The comparison standard errors, their $p$-values and the SERs of the seven KEVs need to be recomputed; I have not measured their numerical changes. They enter the rows Kinne (2018) and Weisiger (2016) of Supplementary Table A.2, the 2016, 2018, Security and All rows of Table 5, Figures 1--3 and, through the small-sample scripts, Supplementary Table A.5. Under the inverse study frequency weighting the seven KEVs carry $(2/6+5/28)/22$, about 2\\%, of the total weight; without an upper bound on their corrected ratios, this gives no upper bound on the corrected mean SER. No rounded figure of the article, the 1.74, the 0.22 and the 67\\% among them, is shown to change. The DCRSEs of the Weisiger models are the subject of \\fid{P032-N004}."
   },
   "url": "https://pmaronow.github.io/llm-audit/works/P032/#P032-E004",
   "work": {
    "arxiv_id": "2109.03774",
    "doi": "10.1017/pan.2023.26",
    "title": "Dyadic Clustering in International Relations",
    "url": "https://pmaronow.github.io/llm-audit/works/P032/"
   },
   "work_id": "P032"
  },
  {
   "before_review": null,
   "class": "error",
   "date_modified": "2026-10-25",
   "date_published": "2026-10-25",
   "evidence_type": "exact_counterexample",
   "exhibits": [
    {
     "alt": "Crop of footnote 3 on page 191, four lines of small type, below the last line of footnote 2. A red box marks the words 'negative parameter estimate variances' in the first line. A second red box marks the words 'force positive semi-definiteness', with force in quotation marks, in the third line.",
     "caption": "Footnote 3, p. 191 (PDF p. 6). The first marked phrase is the case that the footnote addresses, a negative variance of a parameter estimate. The second is the result that the help text of the software promises whenever the option is set.",
     "url": "https://pmaronow.github.io/llm-audit/works/P032/exhibits/P032-E005.png"
    }
   ],
   "formal_release": null,
   "formal_statements": [
    {
     "id": "P032-T6",
     "url": "https://pmaronow.github.io/llm-audit/works/P032/#P032-T6"
    },
    {
     "id": "P032-T7",
     "url": "https://pmaronow.github.io/llm-audit/works/P032/#P032-T7"
    }
   ],
   "headline": "The option of the R and Stata packages that is documented to force the variance matrix to be positive semidefinite replaces negative eigenvalues by zero only when a diagonal entry of the matrix is negative, and it can return an indefinite matrix; the eigenvalue step should run whenever the option is set.",
   "id": "P032-E005",
   "location": "Footnote 3, p. 191 (PDF p. 6), and the software option that it describes. R package dcr (commit 06a80ad): R/dyad_funcs.R, lines 70 and 155, and the help entry for posdef. Stata package dcr (commit 734ee6a): dcr.ado, lines 246–282, and the help entry for psd. The code is not printed in the article.",
   "pdf_page": 6,
   "printed_page": "191",
   "reaches": [],
   "related_entries": [],
   "revisions": [],
   "same_defect_as": [],
   "severity": "Minor",
   "subject": "paper",
   "target_ids": [
    "P032-T6",
    "P032-T7"
   ],
   "text": {
    "as_printed": "Footnote 3, p.~191:\n\nTo account for rare instances where negative parameter estimate variances arise due to non-positive semi-definite variance-covariance matrices, an ``eigendecomposition of the estimated variance matrix \\ldots\\ [that] converts any negative eigenvalue(s) to zero'' and then reassembles the matrix to ``force'' positive semi-definiteness is performed, in line with suggestions from Cameron et al. (2011) and Cameron and Miller (2014).\n\nR help, argument \\texttt{posdef} of the functions \\texttt{dcr} and \\texttt{dcr\\_sandwich}: ``A logical value indicating whether or not DCR variance-covariance matrix is forced to be positive semi-definite.''\n\n\\texttt{R/dyad\\_funcs.R}, lines 70 and 155:\n\n\\texttt{if (\\hl{sum(diag(V.hat) < 0) >= 1 \\&} posdef == TRUE) \\{}\n\nStata help: ``\\texttt{psd} forces the final variance-covariance matrix to be positive semi-definite.''\n\n\\texttt{dcr.ado}, line 268, inside the block that runs when \\texttt{psd} is set. Lines 252--258 set the scalar \\texttt{Indnegvar} to 1 only if a diagonal entry of the matrix is negative.\n\n\\texttt{\\hl{if (Indnegvar==1) \\{}}",
    "corrected": "When the option is set, the packages eigendecompose the symmetric estimated variance matrix \\hl{whatever the signs of its diagonal entries}, replace each negative eigenvalue by zero and reassemble the matrix. For $V=Q\\operatorname{diag}(\\lambda_1,\\dots,\\lambda_k)Q^\\top$ with $Q$ orthogonal, the option returns\n\\[\nV_+=Q\\operatorname{diag}\\bigl(\\max\\{\\lambda_1,0\\},\\dots,\\max\\{\\lambda_k,0\\}\\bigr)Q^\\top,\n\\]\nwhich is positive semidefinite.\n\n\\texttt{R/dyad\\_funcs.R}, lines 70 and 73, and likewise lines 155 and 158:\n\n\\texttt{if (posdef == TRUE) \\{}\n\n\\texttt{V.hat <- decomp\\$vectors \\%*\\% diag(pos\\_eigens\\hl{, nrow = length(pos\\_eigens)}) \\%*\\% t(decomp\\$vectors)}\n\nThe second argument of \\texttt{diag} keeps the formula right for a model with one parameter, where R reads a single number as a dimension.\n\n\\texttt{dcr.ado}: the test on line 268 is removed, so that lines 269--281 run whenever \\texttt{psd} is set.\n\nIn the example above, the corrected option returns approximately\n\\[\n\\begin{pmatrix}0.12609&-0.02150\\\\-0.02150&0.00367\\end{pmatrix}.\n\\]",
    "evidence": "The evidence is an exact counterexample, computed in rational arithmetic and reproduced by running both R functions.\n\nI regress $y$ on an intercept and $x$ by least squares on the ten dyads among five members, taken in the order $(1,2)$, $(1,3)$, $(2,3)$, $(1,4)$, $(2,4)$, $(3,4)$, $(1,5)$, $(2,5)$, $(3,5)$, $(4,5)$, with\n\\[\nx=(3,0,2,1,-1,1,-3,-2,3,-2),\\qquad y=(3,-2,-2,1,1,0,0,2,1,0).\n\\]\nThen\n\\[\nX^\\top X=\\begin{pmatrix}10&2\\\\2&42\\end{pmatrix},\\qquad \\widehat\\beta=(5/13,\\,1/13).\n\\]\nWith $N=5$, the decomposition of p.~191 gives, in the order (intercept, slope),\n\\[\n\\widehat V_r=\\frac{1}{3655808}\\begin{pmatrix}460765&-79681\\\\-79681&7157\\end{pmatrix}.\n\\]\nSince both diagonal entries are positive, neither package applies the eigenvalue step. The determinant of $\\widehat V_r$ is $-70529/308915776$, which implies that one eigenvalue is negative. For $c=(1,6)$, I have\n\\[\nc^\\top\\widehat V_r\\,c=\\frac{460765-12\\cdot 79681+36\\cdot 7157}{3655808}=-\\frac{237755}{3655808}<0,\n\\]\nand this is the estimated variance of the intercept plus six times the slope. Both functions of the R package, installed without modification, return this matrix when \\texttt{posdef = TRUE}, with eigenvalues $0.12975$ and $-0.00176$. For the Stata command, the same matrix follows from the source for the call \\texttt{dcr regress y x, dm1() dm2() dofundo(reglike) psd}, up to the order of the coefficients. Stata was not run.\n\nThe corrected option returns a positive semidefinite matrix. In the notation of the corrected statement below, with $q_j$ the columns of $Q$, I have $c^\\top V_+c=\\sum_j\\max\\{\\lambda_j,0\\}\\,(q_j^\\top c)^2\\ge 0$ for every vector $c$.",
    "problem": "A symmetric matrix whose diagonal entries are all positive can have a negative eigenvalue. Both packages run the eigenvalue step of footnote 3 only if some diagonal entry of the DCR variance matrix is negative. If the matrix is indefinite and its diagonal is positive, the step is skipped. The matrix that the option returns then assigns a negative variance to some linear combination of the coefficients. The help texts of both packages state without this restriction that the option forces the matrix to be positive semidefinite. Footnote 3 speaks of negative parameter variances, and the code agrees with it. The defect is in the guarantee of the software option.",
    "what_survives": "Footnote 3 needs no change. The decomposition and the coefficient estimates are unaffected. The corrected option can change individual DCRSEs when it now leaves an indefinite matrix unchanged. A matrix that is already positive semidefinite is unchanged. Where the option already applies the eigenvalue step, the spectral formula is unchanged. The reanalysis scripts set this option. I did not examine whether any of the 174 models has an indefinite matrix with a positive diagonal, and no published number is shown to change."
   },
   "url": "https://pmaronow.github.io/llm-audit/works/P032/#P032-E005",
   "work": {
    "arxiv_id": "2109.03774",
    "doi": "10.1017/pan.2023.26",
    "title": "Dyadic Clustering in International Relations",
    "url": "https://pmaronow.github.io/llm-audit/works/P032/"
   },
   "work_id": "P032"
  },
  {
   "before_review": null,
   "class": "error",
   "date_modified": "2026-10-25",
   "date_published": "2026-10-25",
   "evidence_type": "exact_counterexample",
   "exhibits": [
    {
     "alt": "Crop of the last five lines of the Conclusion and the start of the Acknowledgements. A red outline marks the words: These open-source packages implement DCRSEs for all the models in the reanalysis sample (and more).",
     "caption": "p. 196 (PDF p. 11), last paragraph of the Conclusion. The marked clause presents the R and Stata packages as implementations of DCRSEs for the models of the reanalysis; the finding concerns the R package.",
     "url": "https://pmaronow.github.io/llm-audit/works/P032/exhibits/P032-E006.png"
    },
    {
     "alt": "Six four-by-four grids in two rows and three columns. Each cell holds a weight, plus one, zero or minus one, for a pair of observations. Top row, the estimator: in the first two columns, two blocks of plus ones for the dyads that share member A and the dyads that share member D, variance one half; in the third column, plus ones on the diagonal only, variance one quarter. Bottom row, the released code: in the first column the two off-diagonal weights for the dyads A,B and A,C are zero, variance three eighths; in the second column the plus ones link observations 1 and 3 and observations 2 and 4, variance zero; in the third column the off-diagonal weights between the first two dyads, whose labels collide, are minus one, variance one eighth. The cells that differ from the estimator are outlined.",
     "caption": "Three exact examples with four observations, responses $y=(1,1,-1,-1)$ and an intercept-only fit. The top row shows the weights on pairs of observations that the estimator defines, and the bottom row the weights that the released routines use on that input. The routines return the variances $3/8$, $0$ and $1/8$ where the estimator gives $1/2$, $1/2$ and $1/4$.",
     "url": "https://pmaronow.github.io/llm-audit/works/P032/exhibits/P032-E006-pairs.png"
    }
   ],
   "formal_release": null,
   "formal_statements": [],
   "headline": "On a subset or reordered data frame, or with member labels that contain underscores, the R routines dcr() and dcr_sandwich() can return a wrong covariance matrix without a warning, because they read row names as row positions and join the two member labels of a dyad with an underscore.",
   "id": "P032-E006",
   "location": "Section 5 (Conclusion), p. 196 (PDF p. 11), sentence beginning “These open-source packages”; R package dcr, file R/dyad_funcs.R, lines 34–35 and 111–112, and file R/helper_funcs.R, line 38",
   "pdf_page": 11,
   "printed_page": "196",
   "reaches": [],
   "related_entries": [],
   "revisions": [],
   "same_defect_as": [],
   "severity": "Moderate",
   "subject": "paper",
   "target_ids": [],
   "text": {
    "as_printed": "\\emph{p.~196.} These open-source packages implement DCRSEs for all the models in the reanalysis sample (and more), and mirror syntax familiar to users of R and Stata.\n\n\\emph{\\texttt{R/dyad\\_funcs.R}, lines 34--35, in \\texttt{dcr()}; repeated at lines 111--112, in \\texttt{dcr\\_sandwich()}.}\n\n\\texttt{touse\\_obs <- \\hl{as.integer(rownames(model.frame(model)))}}\n\n\\texttt{touse\\_data <- data[touse\\_obs,]}\n\n\\emph{\\texttt{R/helper\\_funcs.R}, line 38, in \\texttt{create\\_dyadid()}.}\n\n\\texttt{dyad\\_id <- unlist(lapply(sorteddyads, function(x) as.factor(\\hl{paste0(x, collapse = \"\\_\")})), use.names = F)}",
    "corrected": "\\emph{\\texttt{R/dyad\\_funcs.R}, in \\texttt{dcr()} and in \\texttt{dcr\\_sandwich()}.}\n\n\\texttt{touse\\_obs <- \\hl{match(rownames(model.frame(model)), rownames(data))}}\n\n\\texttt{\\hl{stopifnot(!anyNA(touse\\_obs), !anyDuplicated(touse\\_obs))}}\n\n\\texttt{touse\\_data <- data[touse\\_obs,]}\n\n\\emph{\\texttt{R/helper\\_funcs.R}, in \\texttt{create\\_dyadid()}, in place of \\texttt{paste0(x, collapse = \"\\_\")}.}\n\n\\texttt{\\hl{paste0(nchar(enc2utf8(x), type = \"bytes\"), \":\", enc2utf8(x), collapse = \"\")}}\n\nThe first change matches each fitted row to the row of the data with the same name and stops if a fitted row has no match or two fitted rows match the same data row. The matching must also be used to align every clustering vector to the model's observation order, preserving each covariance routine's handling of omitted rows. Where row names cannot recover this correspondence, the routines should require an explicit observation identifier. The second change puts both labels in UTF-8 and writes each label's byte length before it, so that (A\\_B, C) becomes \\texttt{3:A\\_B1:C} and (A, B\\_C) becomes \\texttt{1:A3:B\\_C}; grouping on the two sorted columns jointly serves equally well. The same change applies to the copies of \\texttt{create\\_dyadid()} in the two R replication scripts. Neither change alters the estimator.",
    "evidence": "The evidence is three exact examples, computed in rational arithmetic and reproduced by running the unmodified package. Each has four observations, responses $y=(1,1,-1,-1)$ and a least-squares fit with an intercept only. The fitted intercept is $0$, the residuals equal $y$, and every variance below is a sum of products of residuals divided by $16$.\n\\begin{audittable}{llllrr}{Variance of the intercept estimate in three exact examples.}\nDyads & Row names & Routine & Members counted & Returned & Correct \\\\\nA--B, A--C, D--E, D--F & 3, 4, 5, 6 & \\texttt{dcr()} & 3 of 6 & $3/8$ & $1/2$ \\\\\nA--B, A--C, D--E, D--F & 1, 3, 2, 4 & \\texttt{dcr\\_sandwich()} & 6 of 6 & $0$ & $1/2$ \\\\\nA\\_B--C, A--B\\_C, D--E, F--G & 1, 2, 3, 4 & both & 8 of 8 & $1/8$ & $1/4$ \\\\\n\\end{audittable}\nSince the dyads are distinct in the first two examples, $\\widehat V_D=\\widehat V_0=4/16=1/4$. The clusters of members A and D each give $(2^2+1+1)/16=3/8$, and the other four members give $1/4$ each. By the decomposition, I have\n\\[\n\\widehat V_r=\\frac{7}{4}-\\frac{1}{4}-4\\cdot\\frac{1}{4}=\\frac{1}{2}.\n\\]\nWith row names 3 to 6, \\texttt{dcr()} reads rows 3 and 4 of the four-row frame and two rows that do not exist. It finds the members D, E and F only, and returns\n\\[\n\\frac{7}{8}-\\frac{1}{4}-(3-2)\\cdot\\frac{1}{4}=\\frac{3}{8}.\n\\]\nWith row names 1, 3, 2, 4, \\texttt{dcr\\_sandwich()} assigns member A to observations 1 and 3 and member D to observations 2 and 4. The residuals in each of these clusters sum to zero, so the clusters of A and D give $2/16=1/8$ each, and the routine returns\n\\[\n2\\cdot\\frac{1}{8}+4\\cdot\\frac{1}{4}-\\frac{1}{4}-4\\cdot\\frac{1}{4}=0.\n\\]\nIn the third example the eight members are distinct. Then no two observations share a member, and I find $\\widehat V_r=\\widehat V_0=1/4$. Since the first two dyads are both labelled A\\_B\\_C, the routines compute $\\widehat V_D=\\{(1+1)^2+1+1\\}/16=3/8$ in place of $1/4$ and return\n\\[\n8\\cdot\\frac{1}{4}-\\frac{3}{8}-6\\cdot\\frac{1}{4}=\\frac{1}{8}.\n\\]\nRow names $101$ to $104$, or names that are not numbers, make both routines stop with an error. With the two changes given below, both routines return $1/2$, $1/2$ and $1/4$ on these inputs.",
    "problem": "The R package is the released implementation of the estimator on p.~191,\n\\[\n\\widehat V_r=\\sum_{i=1}^{N}\\widehat V_{c,i}-\\widehat V_D-(N-2)\\widehat V_0 .\n\\]\nBoth routines convert the row names of the fitted model frame to integers and use them as row positions in the data. Row names label rows; subsetting or reordering a data frame can preserve names that no longer equal row positions. This can make \\texttt{dcr()} build its list of dyad members from the wrong rows, so that $N$ and the sum over members can be wrong; \\texttt{dcr\\_sandwich()} can also attach cluster labels to the wrong observations. Separately, \\texttt{create\\_dyadid()} labels a dyad by sorting its two member labels and joining them with an underscore. The pairs (A\\_B, C) and (A, B\\_C) both receive the label A\\_B\\_C. Two dyads that share no member are then treated as one repeated dyad in $\\widehat V_D$. In each case the routine returns a covariance matrix and gives no warning. The inputs are ordinary. The replication script itself passes a subset of the data for models 1 and 2 of Pratt (2018), where the result happens to be unaffected, and nothing in the documentation of the package excludes underscores in member labels.",
    "what_survives": "This finding does not concern the estimator, its decomposition on p.~191, the Stata command or the simulations. No number reported in the paper is shown to change. For fits 1 to 5 of Pratt (2018), the covariance matrix without the optional small-sample and positive-semidefinite adjustments agrees with an independent calculation to within $10^{-8}$, all $16$ members (fits 1 and 2) and all $25$ members (fits 3 to 5) are counted, and no distinct dyads share a label. The three Arel-Bundock (2017) fits and the sixth Pratt fit could not be checked."
   },
   "url": "https://pmaronow.github.io/llm-audit/works/P032/#P032-E006",
   "work": {
    "arxiv_id": "2109.03774",
    "doi": "10.1017/pan.2023.26",
    "title": "Dyadic Clustering in International Relations",
    "url": "https://pmaronow.github.io/llm-audit/works/P032/"
   },
   "work_id": "P032"
  },
  {
   "before_review": null,
   "class": "error",
   "date_modified": "2026-10-25",
   "date_published": "2026-10-25",
   "evidence_type": "recalculation_from_source",
   "exhibits": [
    {
     "alt": "Crop of five lines of page 192. A red box marks the words '691 KEVs' in the sentence 'The final analytic sample consisted of 691 KEVs across 174 models from 22 studies', which carries the footnote mark 8.",
     "caption": "Section 4, p. 192 (PDF p. 7). The marked count is that of the sample which the merge script produced; two KEVs that the Stata script designates are missing from it.",
     "url": "https://pmaronow.github.io/llm-audit/works/P032/exhibits/P032-E008.png"
    },
    {
     "alt": "The title, the header and the first six rows of Table A.2, Primary Results, Study Level. In the third row, Bermeo and Leblang (2015), IPE, Foreign aid, a red box marks the entry 29 in the column KEVs. The rest of the row reads 0.655, 0.207, 0, 0.138 and Avg. SER 2.2.",
     "caption": "Supplementary Table A.2, p. A3 (PDF p. 3 of the supplement, shown upright), first rows. The marked entry is the number of KEVs of Bermeo and Leblang (2015), which is 31 with the two omitted KEVs.",
     "url": "https://pmaronow.github.io/llm-audit/works/P032/exhibits/P032-E008-b.png"
    }
   ],
   "formal_release": null,
   "formal_statements": [],
   "headline": "A selector in the merge script joins two parameter names into one string and so drops two KEVs of Bermeo and Leblang (2015): with them the sample has 693 KEVs, not 691, and that study has 31, not 29, while every printed ratio and proportion of Table 5 keeps its two-decimal value.",
   "id": "P032-E008",
   "location": "Section 4, p. 192 (PDF p. 7), sentence beginning “The final analytic sample”; Supplementary Table A.2, row Bermeo and Leblang (2015), p. A3 (PDF p. 3 of the supplement); column KEVs of Table 5, p. 193 (PDF p. 8). Replication files: code/3_reanalysis_merge.R, line 128, and the same line of code/dof_corrections/3_reanalysis_merge_dof.R. The code is not printed in the article.",
   "pdf_page": 7,
   "printed_page": "192",
   "reaches": [],
   "related_entries": [],
   "revisions": [],
   "same_defect_as": [],
   "severity": "Minor",
   "subject": "paper",
   "target_ids": [],
   "text": {
    "as_printed": "P.~192: ``The final analytic sample consisted of \\hl{691} KEVs across 174 models from 22 studies.''\n\n\\texttt{3\\_reanalysis\\_merge.R}, line 128:\n\n\\texttt{analysis\\_extract\\_stata(here(\"results\", \"reanalysis\\_stata\", \"bermeo2015/t4m7.xlsx\"),  kev = c(\\hl{\"listock\\_lag MigrationPolicy\\_lag\"}, \"policy\\_stock\\_lag\")),}\n\nSupplementary Table A.2, p.~A3, row Bermeo and Leblang (2015), columns KEVs, Sig.$\\to$Sig., Sig.$\\to$Insig., Insig.$\\to$Sig., Insig.$\\to$Insig., Avg.~SER: \\hl{29}, \\hl{0.655}, \\hl{0.207}, 0, \\hl{0.138}, \\hl{2.2}. Table 5, p.~193, column KEVs: \\hl{122} (2015), \\hl{270} (IPE), \\hl{691} (All).",
    "corrected": "P.~192: ``The final analytic sample consisted of \\hl{693} KEVs across 174 models from 22 studies.''\n\nLine 128 of both merge scripts, with the path unchanged:\n\n\\texttt{kev = c(\\hl{\"listock\\_lag\", \"MigrationPolicy\\_lag\"}, \"policy\\_stock\\_lag\")),}\n\nSupplementary Table A.2, row Bermeo and Leblang (2015): \\hl{31}, \\hl{0.677}, \\hl{0.194}, 0, \\hl{0.129}, \\hl{2.205}. Last row of the table: \\hl{0.456}, \\hl{0.223}, 0.046, \\hl{0.275}, 1.743. Table 5 and Supplementary Table A.5, column KEVs: \\hl{124} (2015), \\hl{272} (IPE), \\hl{693} (All).\n\nThese values are conditional on the saved estimates. The tables and figures are to be regenerated from the corrected merge.",
    "evidence": "The evidence is a recalculation from the saved estimates of the replication files. I ran the authors' extraction function with the printed selector and with the three names separated. I find 29 rows for the study with the first and 31 with the second, in 11 models both times. The two restored rows have SER 2.218 (\\texttt{listock\\_lag}) and 2.331 (\\texttt{MigrationPolicy\\_lag}), and both are significant at the 5\\% level before and after. The counts follow by addition: $667+6+18=691$ becomes $669+6+18=693$, where 6 and 18 are the KEVs of the two studies analyzed in R, and the counts for 2015 and for IPE become 124 and 272. For the study, the script averages ratios rounded to three decimals, and $63.811/29\\approx 2.200$ becomes $68.360/31\\approx 2.205$. The overall average SER lies in $[1.74304,\\,1.74314]$ before and in $[1.74325,\\,1.74335]$ after, and it rounds to 1.743 both times. These are intervals because the means of the two R studies are known to three decimals.",
    "problem": "The Stata script names three KEVs for Table 4, Model 7 of Bermeo and Leblang (2015). Its line 100 reads \\texttt{* Table 4, Model 7; KEV: listock\\_lag MigrationPolicy\\_lag policy\\_stock\\_lag}. The saved results of that model have one row for each. The selector compares whole strings, and the string \\texttt{\"listock\\_lag MigrationPolicy\\_lag\"} equals no parameter name. Only \\texttt{policy\\_stock\\_lag} is kept, and two designated KEVs are left out of the sample. The merge script for the small-sample correction has the same line. The sentence on p.~192 counts correctly the sample that the script produced. The omission is in the sample.",
    "what_survives": "The 174 models and the 22 studies are unchanged, as are all fitted coefficients and variances. Every printed SER and proportion of Table 5 keeps its two-decimal value, including 1.74, 0.22 and 0.05, and the overall average SER remains 1.743. What changes is the number of KEVs in Table 5 and in Supplementary Table A.5, the study row and three entries of the last row in Supplementary Table A.2, and Figures 1--3, which incorporate the two additional KEV estimates."
   },
   "url": "https://pmaronow.github.io/llm-audit/works/P032/#P032-E008",
   "work": {
    "arxiv_id": "2109.03774",
    "doi": "10.1017/pan.2023.26",
    "title": "Dyadic Clustering in International Relations",
    "url": "https://pmaronow.github.io/llm-audit/works/P032/"
   },
   "work_id": "P032"
  },
  {
   "before_review": null,
   "class": "error",
   "date_modified": "2026-10-25",
   "date_published": "2026-10-25",
   "evidence_type": "recalculation_from_source",
   "exhibits": [
    {
     "alt": "The whole of Table A.3, Reanalysis for Models without (C)RSEs, with three rows: Kinne (2018), Copelovitch and Putnam (2014), and Fang, Johnson, and Leeds (2014). A red box marks the three entries of the last column, Avg. SER: 1.03, 0.90 and 1.69. Below the table is the note 'repeated dyad CRSEs computed as comparison to DCRSEs'.",
     "caption": "Supplementary Table A.3, p. A4 (PDF p. 4 of the supplement). The marked column holds ratios of the DCRSE to the nonrobust standard error; the note below the table names the repeated-dyad clustered standard error as the comparison.",
     "url": "https://pmaronow.github.io/llm-audit/works/P032/exhibits/P032-E009.png"
    },
    {
     "alt": "Crop of footnote 9 on page 192, between the last line of footnote 8 and footnote 10. Two red boxes mark the words 'repeated dyad cluster robust standard errors are added in', which run over two lines.",
     "caption": "Footnote 9, p. 192 (PDF p. 7), which cites the table. The marked words state the comparison that the table is meant to report.",
     "url": "https://pmaronow.github.io/llm-audit/works/P032/exhibits/P032-E009-b.png"
    },
    {
     "alt": "A dot chart with three rows and a horizontal axis for the average SER with tick marks from 0.8 to 1.8. Kinne (2018), 4 KEVs: a blue circle labeled 1.03, as printed, joined by a line to an orange square labeled 0.94, recomputed. Copelovitch and Putnam (2014), 45 KEVs: a blue circle labeled 0.90 and an orange square labeled 0.92. Fang, Johnson, and Leeds (2014), 1 KEV: a blue circle labeled 1.69 joined to an orange square labeled 1.22. A dashed vertical line at 1 is labeled DCRSE equals the comparison SE.",
     "caption": "Means of three-decimal SERs for each row of Supplementary Table A.3, using the nonrobust comparison (circles) and the repeated-dyad clustered comparison (squares); labels are rounded to two decimals. The dashed line marks a ratio of one. For Kinne (2018) the recomputed ratio is below one; for Fang, Johnson, and Leeds (2014) it rounds to 1.22 in place of 1.69.",
     "url": "https://pmaronow.github.io/llm-audit/works/P032/exhibits/P032-E009-avg-ser.png"
    }
   ],
   "formal_release": null,
   "formal_statements": [],
   "headline": "The three average SERs of Supplementary Table A.3 divide the DCRSE by the nonrobust standard error of the primary analysis and not by the repeated-dyad clustered standard error that the table note and footnote 9 name; with the stated comparison they are 0.94, 0.92 and 1.22 in place of 1.03, 0.90 and 1.69.",
   "id": "P032-E009",
   "location": "Supplementary Table A.3, column Avg. SER, p. A4 (PDF p. 4 of the supplement), cited in footnote 9, p. 192 (PDF p. 7). Replication script: 3_reanalysis_merge.R, block “CRSE REDO”, lines 707–739. The code is not printed in the article.",
   "pdf_page": 4,
   "printed_page": "A4",
   "reaches": [],
   "related_entries": [],
   "revisions": [],
   "same_defect_as": [],
   "severity": "Moderate",
   "subject": "paper",
   "target_ids": [],
   "text": {
    "as_printed": "Supplementary Table A.3, p.~A4:\n\n\\begin{audittable}{lrrrrrr}{Table A.3: Reanalysis for Models without (C)RSEs}\nStudy & KEVs & Sig.$\\to$Sig. & Sig.$\\to$Insig. & Insig.$\\to$Sig. & Insig.$\\to$Insig. & Avg.~SER \\\\\nKinne (2018) & 4 & 0.75 & 0.00 & 0.00 & 0.25 & \\hl{1.03} \\\\\nCopelovitch and Putnam (2014) & 45 & 0.42 & 0.11 & 0.11 & 0.36 & \\hl{0.90} \\\\\nFang, Johnson, and Leeds (2014) & 1 & 0.00 & 1.00 & 0.00 & 0.00 & \\hl{1.69} \\\\\n\\end{audittable}\n\n``Note: repeated dyad CRSEs computed as comparison to DCRSEs.''\n\nFootnote 9, p.~192: ``See Supplementary Table A.3 for a summary of the results of DCR estimation for these models when repeated dyad cluster robust standard errors are added in.''\n\n\\texttt{3\\_reanalysis\\_merge.R}, line 710, the first of 24 calls of this form on lines 710--738:\n\n\\texttt{analysis\\_extract\\_stata(here(\"results\", \\hl{\"reanalysis\\_stata\"}, \"copelovitch2014/t1m2.xlsx\"), kev = c(\"uncertainty\")),}",
    "corrected": "Supplementary Table A.3, with the note unchanged:\n\n\\begin{audittable}{lrrrrrr}{Table A.3: Reanalysis for Models without (C)RSEs}\nStudy & KEVs & Sig.$\\to$Sig. & Sig.$\\to$Insig. & Insig.$\\to$Sig. & Insig.$\\to$Insig. & Avg.~SER \\\\\nKinne (2018) & 4 & 0.75 & 0.00 & 0.00 & 0.25 & \\hl{0.94} \\\\\nCopelovitch and Putnam (2014) & 45 & 0.42 & 0.11 & 0.11 & 0.36 & \\hl{0.92} \\\\\nFang, Johnson, and Leeds (2014) & 1 & 0.00 & 1.00 & 0.00 & 0.00 & \\hl{1.22} \\\\\n\\end{audittable}\n\n\\texttt{3\\_reanalysis\\_merge.R}, the 24 calls on lines 710--738, of which the first is\n\n\\texttt{analysis\\_extract\\_stata(here(\"results\", \\hl{\"reanalysis\\_stata\\_crse\"}, \"copelovitch2014/t1m2.xlsx\"), kev = c(\"uncertainty\")),}\n\nThese are comparisons of saved estimates and not new fits.",
    "evidence": "The evidence is a recalculation from the saved result files of the replication package. No model was fitted again. I applied the rules of the merge script to the 50 KEVs that the block selects, once in the 24 files that it reads and once in the 24 files that the Stata script writes for the clustered comparison. The rules round each ratio to three decimals, average the rounded ratios, round the mean to three decimals and display it to two decimals. The coefficients and DCRSEs agree up to numerical rounding; the comparison standard errors and their p-values change.\n\n\\begin{audittable}{lrrrr}{Average SER of Supplementary Table A.3 under the two comparison standard errors. ``Files read'' are the result files with the nonrobust comparison, which the block reads; ``clustered files'' are those written for the repeated-dyad clustered comparison. Means are of ratios rounded to three decimals.}\nStudy & KEVs & Printed & Files read & Clustered files \\\\\nKinne (2018) & 4 & 1.03 & $1033/1000=1.033$ & $3741/4000=0.93525$ \\\\\nCopelovitch and Putnam (2014) & 45 & 0.90 & $40417/45000\\approx0.89816$ & $41351/45000\\approx0.91891$ \\\\\nFang, Johnson, and Leeds (2014) & 1 & 1.69 & $1691/1000=1.691$ & $611/500=1.222$ \\\\\n\\end{audittable}\n\nThe files that the block reads reproduce the printed column exactly. For each of the 50 KEVs the significance category at the 5\\% level is the same in both sets of files, so the four proportions of each row are unchanged. As an instance, the one KEV of Fang, Johnson, and Leeds has DCRSE $0.2308$, nonrobust standard error $0.1365$ and repeated-dyad clustered standard error $0.1889$, to four decimals; the two ratios round to $1.691$ and $1.222$.",
    "problem": "Twenty-four models in three studies used neither robust nor clustered standard errors. The Stata script runs the DCR command on each of them twice. The first run uses the comparison standard error of the original study, which is the nonrobust one, and the second uses a standard error clustered on repeated dyads. The script writes the two sets of results to two folders. The block of the merge script that builds Table A.3 reads the first folder for all 24 models. The column Avg.~SER then repeats ratios of the primary analysis. The entries for Copelovitch and Putnam and for Fang, Johnson, and Leeds are rounded versions of those in their rows in Supplementary Table A.2, 0.898 and 1.691. The table does not report the comparison that its note and footnote 9 describe. The difference changes how the table is read. For Kinne (2018) the average ratio is below one and not above it. For Fang, Johnson, and Leeds (2014) the DCRSE is about 22\\% larger than the repeated-dyad clustered standard error, in place of the roughly 69\\% implied by the printed ratio.",
    "what_survives": "The numbers of KEVs and the four significance proportions of Table A.3 are unchanged, and the table note and footnote 9 stand once the column is corrected. Table 5, with the average SER of 1.74 and the significance-loss proportion of 0.22, Figures 1--3 and Supplementary Tables A.1, A.2 and A.4 are built from other objects of the script and do not change under this correction. The merge script for the small-sample correction makes the same choice of folder in a block whose table is not printed."
   },
   "url": "https://pmaronow.github.io/llm-audit/works/P032/#P032-E009",
   "work": {
    "arxiv_id": "2109.03774",
    "doi": "10.1017/pan.2023.26",
    "title": "Dyadic Clustering in International Relations",
    "url": "https://pmaronow.github.io/llm-audit/works/P032/"
   },
   "work_id": "P032"
  },
  {
   "before_review": null,
   "class": "error",
   "date_modified": "2026-10-25",
   "date_published": "2026-10-25",
   "evidence_type": "recalculation_from_source",
   "exhibits": [
    {
     "alt": "Crop of the caption of Figure 3 and its note, below the horizontal axis label Original p-value. A red outline marks the last sentence of the note: The area of each plotted data point is proportional to its inverse study frequency weight.",
     "caption": "p. 195 (PDF p. 10), caption and note of Figure 3. The marked sentence says that the area of a point is proportional to its weight.",
     "url": "https://pmaronow.github.io/llm-audit/works/P032/exhibits/P032-E010.png"
    }
   ],
   "formal_release": null,
   "formal_statements": [],
   "headline": "In Figure 3 the size of a point increases with its inverse study frequency weight, but its area is not proportional to that weight.",
   "id": "P032-E010",
   "location": "Note to Figure 3, p. 195 (PDF p. 10); Section 4.1, p. 196 (PDF p. 11), last sentence",
   "pdf_page": 10,
   "printed_page": "195",
   "reaches": [],
   "related_entries": [],
   "revisions": [],
   "same_defect_as": [],
   "severity": "Minor",
   "subject": "paper",
   "target_ids": [],
   "text": {
    "as_printed": "\\emph{p.~195, note to Figure 3.} The \\hl{area} of each plotted data point \\hl{is proportional to} its inverse study frequency weight.\n\n\\emph{p.~196.} Figure 3 visualizes how the precisions of individual KEV estimates change with the application of DCRSEs across all reanalyzed studies, with the \\hl{area} of each plotted data point \\hl{being proportional to} its inverse study frequency weight.",
    "corrected": "\\emph{p.~195, note to Figure 3.} The \\hl{size} of each plotted data point \\hl{increases with} its inverse study frequency weight.\n\n\\emph{p.~196.} Figure 3 visualizes how the precisions of individual KEV estimates change with the application of DCRSEs across all reanalyzed studies, with \\hl{point size increasing with} inverse study frequency weight.\n\nTo keep the printed wording instead, both panels would be drawn again with an area scale that starts at zero and with no stroke on the points (\\texttt{scale\\_size\\_area(max\\_size = 6)} and \\texttt{stroke = 0}).",
    "evidence": "The evidence is a count of pixels in the image embedded in the published PDF. The point for Horowitz and Stam (2014), variable \\texttt{combat}, has weight $1/3$ and covers $512$ fully black and $605$ nonwhite pixels. The point for Fang, Johnson, and Leeds (2014) has weight $1$ and covers $1131$ and $1263$. However the gray edge pixels are counted, the ratio of the two areas is at most $1263/512\\approx 2.47$, which is less than the ratio $3$ of the weights. In each legend the circles labelled $1.00$ and $0.25$ have an area ratio below $4$: at most $635/214$ in the top panel and $1271/430$ in the bottom panel.",
    "problem": "The plotting code maps the weight to the size of the point without setting a scale that makes point area proportional to weight. In the published figure a point with a larger weight is drawn larger, but the areas are not in proportion to the weights.",
    "what_survives": "The plotted $p$-values, the weighted averages and proportions in Table 5 and Supplementary Table A.2, and Figures 1 and 2 do not use the point-size scale and are unchanged."
   },
   "url": "https://pmaronow.github.io/llm-audit/works/P032/#P032-E010",
   "work": {
    "arxiv_id": "2109.03774",
    "doi": "10.1017/pan.2023.26",
    "title": "Dyadic Clustering in International Relations",
    "url": "https://pmaronow.github.io/llm-audit/works/P032/"
   },
   "work_id": "P032"
  },
  {
   "before_review": null,
   "class": "error",
   "date_modified": "2026-10-25",
   "date_published": "2026-10-25",
   "evidence_type": "exact_counterexample",
   "exhibits": [
    {
     "alt": "Crop of the last row of Table A.5 and the note below it. A red outline marks the sentence that begins: For the purposes of producing a true apples-to-apples comparison, original standard error estimates of reanalyzed studies are similarly treated with a small-sample correction. The sentence ends: degrees-of-freedom equals N sub c minus 1.",
     "caption": "Supplementary Appendix, p. A5 (PDF p. 5), note to Table A.5. The marked sentence says that the original standard errors receive the factor $\\sqrt{N_c/(N_c-1)}$ and a $t$ reference distribution with $N_c-1$ degrees of freedom, where $N_c$ counts the clusters in the analytic sample.",
     "url": "https://pmaronow.github.io/llm-audit/works/P032/exhibits/P032-E011.png"
    }
   ],
   "formal_release": null,
   "formal_statements": [],
   "headline": "In the small-sample reanalysis behind Supplementary Table A.5, the code does not apply the stated correction to the original standard errors of the three Arel-Bundock (2017) models, and it takes the degrees of freedom for four Pratt (2018) models from clusters counted before observations are dropped.",
   "id": "P032-E011",
   "location": "Note to Supplementary Table A.5, Supplementary Appendix p. A5 (PDF p. 5), sentence beginning “For the purposes of producing a true apples-to-apples comparison”; cited in footnote 12, p. 193 (PDF p. 8); replication file code/dof_corrections/2_reanalysis_r_dof.R, lines 87–101 and 151–179",
   "pdf_page": 5,
   "printed_page": "A5",
   "reaches": [],
   "related_entries": [],
   "revisions": [],
   "same_defect_as": [],
   "severity": "Minor",
   "subject": "paper",
   "target_ids": [],
   "text": {
    "as_printed": "\\emph{Table A.5, note.} For the purposes of producing a true apples-to-apples comparison, original standard error estimates of reanalyzed studies are \\hl{similarly treated} with a small-sample correction that is equivalent to multiplying the final estimates of standard error by $\\sqrt{N_c/(N_c-1)}$, where $N_c$ is the number of unique clusters \\hl{in the analytic sample}; the test statistic is likewise compared to a t-distribution with degrees-of-freedom $=N_c-1$.\n\n\\emph{Replication file, lines 88 and 90 (Arel-Bundock, model 1; models 2 and 3 are alike).}\n\n\\texttt{original\\_se = \\hl{sqrt(diag(vcovHC(m1\\_arelbundock2017, type = \"HC0\")))},}\n\n\\texttt{df\\_ori = nobs(m1\\_arelbundock2017) - 1,}\n\n\\emph{Replication file, line 154 (Pratt, model 1; models 2 to 6 are alike).}\n\n\\texttt{df\\_ori = \\hl{length(unique(spec1\\_data\\_pratt2018\\$Dir.DyadID))} - 1,}",
    "corrected": "In \\texttt{2\\_reanalysis\\_r\\_dof.R}, for each of the three Arel-Bundock (2017) models, the original standard error is \\hl{$\\sqrt{n/(n-1)}$ times} the HC0 standard error, where $n$ is \\texttt{nobs(model)}. For each Pratt (2018) model, the original degrees of freedom are $N_c-1$, where $N_c$ is the number of distinct values of \\texttt{Dir.DyadID} \\hl{in the source-data rows matched by row name to \\texttt{model.frame(model)}}. This gives $208$, $208$, $289$, $328$ and $327$ degrees of freedom for models 1 to 5. Table A.5 is then recomputed.\n\nThe note to Table A.5 should also state which finite-sample factors each original standard error carries. After the two changes these are the HC0 standard error times $\\sqrt{n/(n-1)}$ for Arel-Bundock (2017); the \\texttt{sandwich::vcovCL} defaults for Pratt (2018), with no further factor; and, for the Stata studies, the covariance returned by the original command times $N_c/(N_c-1)$.",
    "evidence": "The evidence is an exact example run through the script's own function and a refit of the Pratt models. Let $x=(0,1,2,3)$ and $y=(0,1,1,3)$, and consider the least-squares fit with an intercept. The coefficients are $(-1/10,\\,9/10)$ and the residuals are $(1/10,\\,1/5,\\,-7/10,\\,2/5)$. A direct computation gives\n\\[\nV_{\\mathrm{HC0}}=\\begin{pmatrix}113/5000&-21/2500\\\\-21/2500&103/5000\\end{pmatrix},\\qquad\n\\frac{4}{3}\\,V_{\\mathrm{HC0}}=\\begin{pmatrix}113/3750&-7/625\\\\-7/625&103/3750\\end{pmatrix}.\n\\]\nThe function \\texttt{reg\\_table} of the script returns the standard errors $0.1503$ and $0.1435$ from the first matrix, while the note with $N_c=n=4$ requires $0.1736$ and $0.1657$ from the second. In general the squared ratio of the two is $(n-1)/n$. For the first model of Arel-Bundock (2017), with $n=3971$ (Supplementary Table A.1), the missing factor is $\\sqrt{3971/3970}\\approx 1.000126$.\n\nFor Pratt (2018), refitting models 1 to 5 on the data in the replication files and counting the clusters among the fitted rows, I obtain the following.\n\\begin{audittable}{rrrrrr}{Pratt (2018), models 1--5: clusters and original degrees of freedom.}\nModel & Rows in fit & Clusters, all rows & Clusters, fit & df in script & df by the note \\\\\n1 & 1177 & 238 & 209 & 237 & 208 \\\\\n2 & 1177 & 238 & 209 & 237 & 208 \\\\\n3 & 2025 & 329 & 290 & 328 & 289 \\\\\n4 & 3718 & 329 & 329 & 328 & 328 \\\\\n5 & 3343 & 329 & 328 & 328 & 327 \\\\\n\\end{audittable}\nThe $p$-value of the KEV in model 1 is $0.07748$ with $237$ degrees of freedom and $0.07766$ with $208$. No KEV in these five models crosses the 5\\% level when the degrees of freedom are corrected. Model 6 was not refitted.",
    "problem": "The note describes two steps for the original standard errors, and the R script for this reanalysis departs from each. For the three Arel-Bundock (2017) models the original standard error is the HC0 standard error, and no factor is applied. Under HC0 each observation is its own cluster. This implies that $N_c$ is the number $n$ of observations in the fit, and the note calls for the factor $\\sqrt{n/(n-1)}$. For the Pratt (2018) models the degrees of freedom are one less than the number of clusters in the data frame passed to the fit. The fit drops rows with missing values, and the clusters that remain are fewer in models 1, 2, 3 and 5.\n\nTwo other points qualify the comparison and are not counted as errors. The original standard errors for Pratt (2018) come from \\texttt{sandwich::vcovCL}, whose defaults already supply $G/(G-1)$ for $G$ clusters, and $(n-1)/(n-k)$ in the least-squares fits. For the Stata studies the command multiplies the refitted original covariance by $N_c/(N_c-1)$, as the note says. For Shelef (2016) that covariance already carries $\\{G/(G-1)\\}\\{(n-1)/(n-k)\\}$, and the cluster factor enters twice.",
    "what_survives": "This finding does not contradict the DCRSEs, the primary analysis in Table 5, or the statement of footnote 12 that the small-sample reanalysis shows no substantive differences. The two corrections bear on Table A.5 alone. There the original standard errors of the first model of Arel-Bundock (2017) grow by a factor of about $1.0001$, and the original $p$-values of the KEVs in models 1 to 5 of Pratt (2018) move by less than $0.0002$. A corrected Table A.5 has not been computed."
   },
   "url": "https://pmaronow.github.io/llm-audit/works/P032/#P032-E011",
   "work": {
    "arxiv_id": "2109.03774",
    "doi": "10.1017/pan.2023.26",
    "title": "Dyadic Clustering in International Relations",
    "url": "https://pmaronow.github.io/llm-audit/works/P032/"
   },
   "work_id": "P032"
  },
  {
   "before_review": null,
   "class": "error",
   "date_modified": "2026-10-25",
   "date_published": "2026-10-25",
   "evidence_type": "page_check",
   "exhibits": [
    {
     "alt": "Four lines of text. In the second line a red box surrounds the link 'section 3', in the sentence 'With the same six observations, section 3 demonstrates the additional clustering permitted.' The fourth line begins the next paragraph with 'In Table 3, we can see that'.",
     "caption": "First paragraph below Table 4, p. 190 (PDF p. 5), with the first line of the next paragraph. The mark is on “section 3”.",
     "url": "https://pmaronow.github.io/llm-audit/works/P032/exhibits/P032-E003.png"
    }
   ],
   "formal_release": null,
   "formal_statements": [],
   "headline": "The cross-reference “section 3” should read “Table 3”.",
   "id": "P032-E003",
   "location": "First paragraph below Table 4, second sentence, p. 190 (PDF p. 5)",
   "pdf_page": 5,
   "printed_page": "190",
   "reaches": [],
   "related_entries": [],
   "revisions": [],
   "same_defect_as": [],
   "severity": "Minor",
   "subject": "paper",
   "target_ids": [],
   "text": {
    "as_printed": "With the same six observations, \\hl{section 3} demonstrates the additional clustering permitted.",
    "corrected": "With the same six observations, \\hl{Table 3} demonstrates the additional clustering permitted.",
    "evidence": "I checked the page. The next paragraph begins ``In Table 3'', and the parallel sentence on p.~189 reads ``Table 2 demonstrates''.",
    "problem": "The passage points to a section instead of the covariance table used in its comparison. The sentence stands in Section 3 and introduces the covariance structure assumed under clustering by repeated dyad, which Table 3 displays.",
    "what_survives": "The covariance comparison is unaffected by the wrong cross-reference."
   },
   "url": "https://pmaronow.github.io/llm-audit/works/P032/#P032-E003",
   "work": {
    "arxiv_id": "2109.03774",
    "doi": "10.1017/pan.2023.26",
    "title": "Dyadic Clustering in International Relations",
    "url": "https://pmaronow.github.io/llm-audit/works/P032/"
   },
   "work_id": "P032"
  },
  {
   "before_review": null,
   "class": "error",
   "date_modified": "2026-10-25",
   "date_published": "2026-10-25",
   "evidence_type": "page_check",
   "exhibits": [
    {
     "alt": "Crop of three entries of the reference list. A red outline marks the year 2017 in the entry: Erikson, R. S., P. M. Pinto, and K. T. Rader. 2017. Dyadic Analysis in International Relations: A Cautionary Tale. Political Analysis 22 (4): 457 to 463.",
     "caption": "p. 197 (PDF p. 12), reference list. The marked year in the entry for Erikson, Pinto, and Rader is 2017; the entry places the article in volume 22, issue 4.",
     "url": "https://pmaronow.github.io/llm-audit/works/P032/exhibits/P032-E012.png"
    }
   ],
   "formal_release": null,
   "formal_statements": [],
   "headline": "The article by Erikson, Pinto, and Rader was published in 2014, not 2017.",
   "id": "P032-E012",
   "location": "References, p. 197 (PDF p. 12), entry for Erikson, Pinto, and Rader; citations on pp. 186–187 (PDF pp. 1–2)",
   "pdf_page": 12,
   "printed_page": "197",
   "reaches": [],
   "related_entries": [],
   "revisions": [],
   "same_defect_as": [],
   "severity": "Minor",
   "subject": "paper",
   "target_ids": [],
   "text": {
    "as_printed": "\\emph{p.~197.} Erikson, R. S., P. M. Pinto, and K. T. Rader. \\hl{2017}. ``Dyadic Analysis in International Relations: A Cautionary Tale.'' \\emph{Political Analysis} 22 (4): 457--463.\n\n\\emph{pp.~186--187.} ``Erikson, Pinto, and Rader (\\hl{2017})''; ``Erikson et al. (\\hl{2017})''; ``Erikson et al. \\hl{2017}''.",
    "corrected": "\\emph{p.~197.} Erikson, R. S., P. M. Pinto, and K. T. Rader. \\hl{2014}. ``Dyadic Analysis in International Relations: A Cautionary Tale.'' \\emph{Political Analysis} 22 (4): 457--463.\n\n\\emph{pp.~186--187.} ``Erikson, Pinto, and Rader (\\hl{2014})''; ``Erikson et al. (\\hl{2014})''; ``Erikson et al. \\hl{2014}''.",
    "evidence": "The evidence is a check of the publisher's page for the article, \\url{https://doi.org/10.1093/pan/mpt051}, which gives Volume 22, Issue 4, Autumn 2014, pp.~457--463. In the same reference list, \\emph{Political Analysis} 23 (4) is dated 2015 and 24 (4) is dated 2016.",
    "problem": "Volume 22, issue 4 of \\emph{Political Analysis} is the Autumn 2014 issue. The publisher's page for the article also carries the line ``Published online by Cambridge University Press: 04 January 2017'', and that date is not the year of the journal issue.",
    "what_survives": "The article is identified correctly by its authors, title, volume, issue and pages; only the year changes, in the reference and in its three citations."
   },
   "url": "https://pmaronow.github.io/llm-audit/works/P032/#P032-E012",
   "work": {
    "arxiv_id": "2109.03774",
    "doi": "10.1017/pan.2023.26",
    "title": "Dyadic Clustering in International Relations",
    "url": "https://pmaronow.github.io/llm-audit/works/P032/"
   },
   "work_id": "P032"
  },
  {
   "before_review": null,
   "class": "clarity_note",
   "date_modified": "2026-10-25",
   "date_published": "2026-10-25",
   "evidence_type": "complete_derivation",
   "exhibits": [
    {
     "alt": "A table titled 'Table 4. Dyadic clustering.' with header cell 'ijt / i-prime j-prime t-prime' and six columns and six rows labelled 111, 112, 211, 212, 221, 222. A red box surrounds the six column labels and a second red box surrounds the six row labels. The cells contain expectations of products of residuals, such as E[u_111 u_112], except that the four cells pairing rows 111 and 112 with columns 221 and 222, and the four cells pairing rows 221 and 222 with columns 111 and 112, contain 0.",
     "caption": "Table 4, p. 190 (PDF p. 5). The column labels and the row labels are marked; Tables 2 and 3 on the same page carry the same labels.",
     "url": "https://pmaronow.github.io/llm-audit/works/P032/exhibits/P032-N003.png"
    }
   ],
   "formal_release": null,
   "formal_statements": [
    {
     "id": "P032-T11",
     "url": "https://pmaronow.github.io/llm-audit/works/P032/#P032-T11"
    }
   ],
   "headline": "The six observations of Tables 2–4 stand for three dyads, each observed twice, of which the middle one shares a member with each of the other two; with the indices of p. 189, the labels 111, 112, 221 and 222 pair a country with itself.",
   "id": "P032-N003",
   "location": "Tables 2, 3 and 4, row and column labels, p. 190 (PDF p. 5)",
   "pdf_page": 5,
   "printed_page": "190",
   "reaches": [],
   "related_entries": [],
   "revisions": [],
   "same_defect_as": [],
   "severity": null,
   "subject": "paper",
   "target_ids": [
    "P032-T11"
   ],
   "text": {
    "as_printed": "In each of Tables 2--4 the header is $ijt\\,/\\,i'j't'$, and the rows and columns are labelled \\hl{111, 112, 211, 212, 221, 222}. Table 4, for example, has $\\mathrm{E}[u_{111}u_{112}]$ in the cell $(111,112)$, $\\mathrm{E}[u_{221}u_{222}]$ in the cell $(221,222)$, and $0$ in the cells that pair 111 or 112 with 221 or 222.",
    "corrected": "In Tables 2--4, replace the row and column labels, and the matching subscripts of $u$, as follows: 111 by \\hl{121}, 112 by \\hl{122}, 211 by \\hl{131}, 212 by \\hl{132}, 221 by \\hl{341} and 222 by \\hl{342}. The observations are then the dyads $(1,2)$, $(1,3)$ and $(3,4)$, each in two periods, and every zero and nonzero entry of the three tables is unchanged.",
    "intended_meaning": "Page 189 defines $Y_{ijt}$ as the level of commerce between countries $i$ and $j$ in period $t$. With these indices, the printed labels are the dyads $(1,1)$, $(2,1)$ and $(2,2)$ in periods 1 and 2, and two of the three pair a country with itself. The tables are a schematic of three pairs of countries, each observed twice, in which the middle pair shares a member with each outer pair and the outer pairs share none. The zero pattern of each table is correct for this picture, and also for the labels as printed. The labels matter only if the illustration is carried to the decomposition on p.~191. For a dyad that pairs a member with itself, the decomposition gives weight 0 to the covariance between its two observations, where Table 4 has a nonzero entry. With distinct members, the decomposition agrees with Table 4 in all 36 cells."
   },
   "url": "https://pmaronow.github.io/llm-audit/works/P032/#P032-N003",
   "work": {
    "arxiv_id": "2109.03774",
    "doi": "10.1017/pan.2023.26",
    "title": "Dyadic Clustering in International Relations",
    "url": "https://pmaronow.github.io/llm-audit/works/P032/"
   },
   "work_id": "P032"
  },
  {
   "before_review": null,
   "class": "error",
   "date_modified": "2026-10-25",
   "date_published": "2026-10-25",
   "evidence_type": "exact_counterexample",
   "exhibits": [
    {
     "alt": "Crop of the top of page 191: two lines of text, the displayed equation V hat r equals the sum over i from 1 to N of V hat c,i, minus V hat D, minus (N minus 2) V hat 0, and the paragraph that defines the four matrices. A red box marks the term (N minus 2) V hat 0 in the display. Two more red boxes mark the words 'V hat 0 is the estimated heteroskedasticity-consistent variance-covariance matrix', which run over two lines.",
     "caption": "The decomposition on p. 191 (PDF p. 6). The marked term is the piece that the command takes from a fit with vce(robust); the marked words define it as the heteroskedasticity-consistent matrix, in which every observation is its own cluster. The display is correct as printed.",
     "url": "https://pmaronow.github.io/llm-audit/works/P032/exhibits/P032-N004.png"
    },
    {
     "alt": "The whole of Table A.2, Primary Results, Study Level: 22 rows, one per study, with columns Study, Subfield, Secondary Subfield, Primary Relationship Tested, KEVs, four significance proportions and Avg. SER, and a last row Average-of-Averages. A red box marks the row Efrat and Newman (2016), IOs/International Law, 4 KEVs, Avg. SER 4.158. A second red box marks the row Weisiger (2016), Security, 28 KEVs, Avg. SER 3.268.",
     "caption": "Supplementary Table A.2, p. A3 (PDF p. 3 of the supplement, shown upright). The marked rows are the two studies whose models are fitted with stcox and stcrreg. Their average SERs, 4.158 and 3.268, are the largest and the third largest of the table. The values are not shown to be wrong; they were not computed with the observation-level matrix.",
     "url": "https://pmaronow.github.io/llm-audit/works/P032/exhibits/P032-N004-b.png"
    }
   ],
   "formal_release": null,
   "formal_statements": [
    {
     "id": "P032-T3",
     "url": "https://pmaronow.github.io/llm-audit/works/P032/#P032-T3"
    },
    {
     "id": "P032-T4",
     "url": "https://pmaronow.github.io/llm-audit/works/P032/#P032-T4"
    },
    {
     "id": "P032-T11",
     "url": "https://pmaronow.github.io/llm-audit/works/P032/#P032-T11"
    }
   ],
   "headline": "For the 13 survival models behind the Efrat and Newman (2016) and Weisiger (2016) rows of Supplementary Table A.2, the Stata command takes $\\widehat V_0$ from a fit with vce(robust), whose variance on data declared with stset and an id() variable is clustered on that variable and is not the observation-level matrix that the decomposition requires; the piece should be clustered on an observation index and the 13 models fitted again.",
   "id": "P032-N004",
   "location": "Display for $\\widehat V_r$ and definition of $\\widehat V_0$, p. 191 (PDF p. 6); Supplementary Table A.2, rows Efrat and Newman (2016) and Weisiger (2016), p. A3 (PDF p. 3 of the supplement). Replication files: dcr.ado, lines 163–190, and 1_reanalysis_stata.do, lines 319–334 and 347–418. The code is not printed in the article.",
   "pdf_page": 6,
   "printed_page": "191",
   "reaches": [],
   "related_entries": [],
   "revisions": [],
   "same_defect_as": [],
   "severity": "Moderate",
   "subject": "paper",
   "target_ids": [
    "P032-T11",
    "P032-T3",
    "P032-T4"
   ],
   "text": {
    "as_printed": "P.~191:\n\\[\n\\widehat V_r=\\sum_{i=1}^{N}\\widehat V_{c,i}-\\widehat V_D-(N-2)\\widehat V_0,\n\\]\nwhere \\ldots\\ $\\widehat V_0$ is the estimated heteroskedasticity-consistent variance--covariance matrix.\n\n\\texttt{dcr.ado}, lines 164, 178 and 190, in the block headed ``Calculate heteroskedasticity robust vcov'':\n\n\\texttt{qui `prefix' `command\\_line' if `touse' `weight', `options' \\hl{vce(robust)}}\n\n\\texttt{matrix vhet = e(V)}\n\n\\texttt{matrix vcov = vcov - ((N\\_ud - 2)*unadjust*vhet)}\n\n\\texttt{1\\_reanalysis\\_stata.do}, line 319 (Efrat and Newman) and line 347 (Weisiger). Lines 355, 368, 376, 384 and 397 declare the same id as line 347, and line 408 declares \\texttt{id(idvar)}.\n\n\\texttt{stset T1, failure(acceptance==1) id(dyad)}\n\n\\texttt{stset warday, id(warnum) f(endday)}\n\nSupplementary Table A.2, p.~A3, columns KEVs, Sig.$\\to$Sig., Sig.$\\to$Insig., Insig.$\\to$Sig., Insig.$\\to$Insig., Avg.~SER. Efrat and Newman (2016): 4, 0.5, 0.5, 0, 0, 4.158. Weisiger (2016): 28, 0.143, 0.607, 0, 0.25, 3.268.",
    "corrected": "The decomposition, with the conditions under which it is an identity. Let each observation $r$ of the estimation sample have an unordered dyad $d_r$ of two distinct members, let $N$ be the number of distinct members, and let $z_r$ be the contribution of observation $r$ to the estimate, that is, its score contribution multiplied by the common bread matrix. Let all pieces come from one fit on one sample, without finite-sample factors:\n\\[\n\\widehat V_0=\\sum_r z_rz_r^\\top,\\qquad\n\\widehat V_D=\\sum_{r,s:\\,d_r=d_s}z_rz_s^\\top,\\qquad\n\\widehat V_{c,i}=\\sum_{r,s:\\,i\\in d_r\\cap d_s}z_rz_s^\\top+\\sum_{r:\\,i\\notin d_r}z_rz_r^\\top .\n\\]\nThen\n\\[\n\\sum_{i=1}^{N}\\widehat V_{c,i}-\\widehat V_D-(N-2)\\widehat V_0=\\sum_{r,s:\\,d_r\\cap d_s\\ne\\varnothing}z_rz_s^\\top=\\widehat V_r .\n\\]\nIn particular, $\\widehat V_0$ is \\hl{clustered on single observations and not on the id of the survival-time data}.\n\nIn \\texttt{dcr.ado}, for a command run on data with an \\texttt{stset} id, the piece \\texttt{vhet} is fitted with \\hl{an explicit cluster variable that takes a different value on every observation of the estimation sample}, in place of \\texttt{vce(robust)}. The \\texttt{stset} id is kept, since \\texttt{stcrreg} uses it for its censoring weights. Every piece is fitted with \\texttt{noadjust} and \\texttt{\\hl{dofundo(none)}}, or the factor that the command applied to a piece is removed with the number of clusters which that fit reports, so that all pieces carry the same scaling. This describes the repair; it is not a patch that has been run in Stata.\n\nThe rows Efrat and Newman (2016) and Weisiger (2016) of Supplementary Table A.2, and the entries of Table 5, Supplementary Table A.5 and Figures 1--3 that use them, are to be recomputed after the 13 models are fitted again. I give no corrected values.",
    "evidence": "The evidence has three parts: a check of the code, the documentation of the two Stata commands, and an exact example.\n\nIn \\texttt{dcr.ado}, lines 108--119 give all observations that contain a member the cluster value $-99$ and give every other observation its own row number. Lines 126 and 202 fit the repeated-dyad piece and the member-specific pieces with explicit cluster variables. Line 164 fits the piece called \\texttt{vhet} with \\texttt{vce(robust)}, and line 190 subtracts $(N-2)$ times it.\n\nThe Stata Survival Analysis Reference Manual, Release 15 (StataCorp 2017), in the entry [ST] stcox, technical note under ``Robust estimate of variance'' (p.~17), says of \\texttt{vce(robust)} on data with an id that ``stcox knew to specify vce(cluster id)'', and it lets an explicit cluster variable override the id. The entry [ST] stcrreg, last paragraph of ``Methods and formulas'' (p.~24), states that the clustered version of the variance is used when a cluster variable is given ``or an ID variable has been stset.'' The description of \\texttt{noadjust} in [ST] stcox (p.~4) gives the default multiplier as $n/(n-1)$ or $g/(g-1)$. I read these entries, and the current ones, which agree with them. I did not read Release 17, which the replication files name, and Stata was not run.\n\nThe example has six subjects, one for each dyad among four members, with ten observations, one covariate $x$ and no weights. Status 1 is the event of interest, and status 2 is a competing event, treated as censoring.\n\n\\begin{audittable}{rrcrrrr}{An exact survival example: ten observations, six ids, four dyad members.}\nRow & Id & Dyad & Interval & $x$ & Status & Score at $\\widehat\\beta=0$ \\\\\n1 & 1 & $\\{1,2\\}$ & $(0,1]$ & $1$ & 1 & $2/3$ \\\\\n2 & 2 & $\\{3,4\\}$ & $(0,1]$ & $-1$ & 1 & $-2/3$ \\\\\n3 & 3 & $\\{1,3\\}$ & $(0,1]$ & $1$ & 0 & $-1/3$ \\\\\n4 & 3 & $\\{1,3\\}$ & $(1,2]$ & $3$ & 1 & $3/2$ \\\\\n5 & 4 & $\\{2,4\\}$ & $(0,1]$ & $-1$ & 0 & $1/3$ \\\\\n6 & 4 & $\\{2,4\\}$ & $(1,2]$ & $-3$ & 1 & $-3/2$ \\\\\n7 & 5 & $\\{1,4\\}$ & $(0,1]$ & $1$ & 0 & $-1/3$ \\\\\n8 & 5 & $\\{1,4\\}$ & $(1,3]$ & $1$ & 2 & $-1/2$ \\\\\n9 & 6 & $\\{2,3\\}$ & $(0,1]$ & $-1$ & 0 & $1/3$ \\\\\n10 & 6 & $\\{2,3\\}$ & $(1,3]$ & $-1$ & 2 & $1/2$ \\\\\n\\end{audittable}\n\nWith Breslow ties the Cox partial likelihood is maximized at $\\widehat\\beta=0$, the information is $12$, and the scores of the ten observations are those of the last column. Multiplying the sums of squared scores by $1/144$, I obtain the pieces below.\n\n\\begin{audittable}{lr}{The pieces of the decomposition in the example ($N=4$), and what the decomposition returns.}\nQuantity & Value \\\\\n$\\widehat V_0$, every observation its own cluster & $19/432$ \\\\\n$\\widehat V_{\\mathrm{id}}$, clustered on the id (equal to $\\widehat V_D$ here) & $15/432$ \\\\\n$\\sum_i\\widehat V_{c,i}$ & $68/432$ \\\\\nDecomposition as printed: $\\sum_i\\widehat V_{c,i}-\\widehat V_D-2\\widehat V_0$ & $15/432=5/144$ \\\\\nWith $\\widehat V_{\\mathrm{id}}$ in place of $\\widehat V_0$ & $23/432$ \\\\\nWith $\\alpha\\widehat V_{\\mathrm{id}}$ in place of $\\widehat V_0$, $\\alpha=(9/10)(6/5)=27/25$ & $103/2160$ \\\\\n\\end{audittable}\n\nThe printed decomposition returns $5/144$, which is also the sum of the products of all pairs of observations that share a member. With the variance matrix clustered on the id, it returns a variance $23/15$ times as large, and with the factor of the Weisiger calls a variance $103/75$ times as large. All three values are positive, so the eigenvalue step changes none of them.\n\nThe identity in the corrected statement holds by counting. The product $z_rz_s^\\top$ of two observations enters $\\sum_i\\widehat V_{c,i}$ once for each member $i$ for which the two observations lie in one cluster. If $r=s$, this happens $N$ times, and subtracting $\\widehat V_D$ and $(N-2)\\widehat V_0$ leaves $N-1-(N-2)=1$. If $r\\ne s$ and the two observations have the same dyad, it happens twice, and subtracting $\\widehat V_D$ leaves $1$. If the dyads differ and share one member, it happens once and nothing is subtracted. If the dyads share no member, the product does not appear.",
    "problem": "The decomposition is an identity when all of its pieces are sums over the contributions of the same observations, where an observation is one row of the data. In $\\widehat V_{c,i}$ all observations whose dyad contains member $i$ form one cluster and each other observation is its own cluster, and in $\\widehat V_0$ every observation is its own cluster. The Stata command builds the member-specific pieces in this way. It obtains $\\widehat V_0$ by fitting the model again with \\texttt{vce(robust)}, and it subtracts $(N-2)$ times the result. For \\texttt{stcox} and \\texttt{stcrreg}, on data declared with \\texttt{stset} and an \\texttt{id()} variable, the variance that Stata returns for \\texttt{vce(robust)} is clustered on the id. The contributions of all observations with one id are summed before they are squared. The reanalysis declares such an id for the three \\texttt{stcox} models of Efrat and Newman (2016) and for the ten models of Weisiger (2016), two \\texttt{stcox} and eight \\texttt{stcrreg}. These 13 models hold 32 KEVs. For them the command returns, before the eigenvalue step of footnote 3 and when every piece carries the same scaling,\n\\[\n\\sum_{i=1}^{N}\\widehat V_{c,i}-\\widehat V_D-(N-2)\\widehat V_{\\mathrm{id}}=\\widehat V_r+(N-2)\\bigl(\\widehat V_0-\\widehat V_{\\mathrm{id}}\\bigr),\n\\]\nwhere $\\widehat V_{\\mathrm{id}}$ is the variance matrix clustered on the id. The Weisiger calls set \\texttt{dofundo(asylike)}, which multiplies the piece by $(n-1)/n$, with $n$ the number of observations, while the factor that Stata documents for a clustered variance is $g/(g-1)$, with $g$ the number of ids. The last term is then $(N-2)\\bigl(\\widehat V_0-\\alpha\\widehat V_{\\mathrm{id}}\\bigr)$ with $\\alpha=((n-1)/n)(g/(g-1))$. The difference from $\\widehat V_r$ has no fixed sign, and any difference between the two matrices is multiplied by $N-2$. I did not fit the 13 models again, and I do not know the size or the sign of the difference in the two studies.",
    "what_survives": "The printed decomposition is correct as an identity, and the 20 studies that are not fitted with these survival commands are not touched by this point. What changes is the standing of the two rows of Supplementary Table A.2. They are not shown to be DCRSEs as p.~191 defines them. The two rows enter the 2016, IOs/International Law, Security and All rows of Table 5, the upper end of the range ``0.90 to 4.16'' on p.~196, Figures 1--3 and, through the small-sample scripts, Supplementary Table A.5. No corrected value has been computed, and none of these numbers is shown to change. The following averages show how much rests on the two rows and are not corrections. The mean of the Avg.~SER column of Table A.2 over the other 20 studies is 1.546, against 1.743 over all 22. The mean for IOs/International Law without Efrat and Newman is 1.701, and the mean for Security without Weisiger is 1.338."
   },
   "url": "https://pmaronow.github.io/llm-audit/works/P032/#P032-N004",
   "work": {
    "arxiv_id": "2109.03774",
    "doi": "10.1017/pan.2023.26",
    "title": "Dyadic Clustering in International Relations",
    "url": "https://pmaronow.github.io/llm-audit/works/P032/"
   },
   "work_id": "P032"
  },
  {
   "before_review": null,
   "class": "clarity_note",
   "date_modified": "2026-10-25",
   "date_published": "2026-10-25",
   "evidence_type": "complete_derivation",
   "exhibits": [
    {
     "alt": "Crop of the top of page 191: two lines of text, the displayed equation for V hat r, and the paragraph that defines its terms. Two small red boxes mark the letter N, once as the upper limit of the sum and once inside the bracket (N minus 2). Two more red boxes mark the words 'V hat c,i is the estimated dyad-member-i-specific clustered variance-covariance matrix', which run over two lines.",
     "caption": "The decomposition on p. 191 (PDF p. 6). The marked symbol $N$ is not defined on the page, and the marked definition of $\\widehat V_{c,i}$ does not say how the remaining observations are clustered.",
     "url": "https://pmaronow.github.io/llm-audit/works/P032/exhibits/P032-N005.png"
    }
   ],
   "formal_release": null,
   "formal_statements": [
    {
     "id": "P032-T11",
     "url": "https://pmaronow.github.io/llm-audit/works/P032/#P032-T11"
    }
   ],
   "headline": "The decomposition does not say what $N$ is, nor how $\\widehat V_{c,i}$ treats the observations whose dyad does not contain member $i$: $N$ is the number of unique dyad members, and each such observation is its own cluster.",
   "id": "P032-N005",
   "location": "Display for $\\widehat V_r$ and the sentence that defines its terms, p. 191 (PDF p. 6)",
   "pdf_page": 6,
   "printed_page": "191",
   "reaches": [],
   "related_entries": [],
   "revisions": [],
   "same_defect_as": [],
   "severity": null,
   "subject": "paper",
   "target_ids": [
    "P032-T11"
   ],
   "text": {
    "as_printed": "\\[\n\\widehat V_r=\\sum_{i=1}^{\\hl{\\scriptstyle N}}\\widehat V_{c,i}-\\widehat V_D-(\\hl{N}-2)\\widehat V_0,\n\\]\nwhere $\\widehat V_r$ is the estimated DCR variance--covariance matrix for longitudinal data; $\\widehat V_{c,i}$ is the estimated \\hl{dyad-member-$i$-specific clustered} variance--covariance matrix; $\\widehat V_D$ is the estimated repeated-dyad clustered variance--covariance matrix; and $\\widehat V_0$ is the estimated heteroskedasticity-consistent variance--covariance matrix.",
    "corrected": "After the display and its definitions, add: \\hl{Here $N$ is the number of unique dyad members. In $\\widehat V_{c,i}$, all observations whose dyad contains member $i$ form one cluster and each remaining observation forms its own singleton cluster. The components use the same unadjusted sandwich convention, and each dyad contains two distinct members.}",
    "intended_meaning": "$N$ is the number of unique dyad members, as the note to Supplementary Table A.5 says. In $\\widehat V_{c,i}$ all observations whose dyad contains member $i$ form one cluster, which footnote 2 indicates, and every other observation is a cluster by itself. The pieces carry no finite-sample factors, and each dyad has two distinct members. With these definitions the display is an exact identity. In $\\sum_i\\widehat V_{c,i}$ the square of an observation appears $N$ times, the product of two observations of the same dyad twice, and the product of two observations whose dyads share one member once. Subtracting $\\widehat V_D$ and $(N-2)\\widehat V_0$ leaves each of these exactly once. The R package uses these definitions."
   },
   "url": "https://pmaronow.github.io/llm-audit/works/P032/#P032-N005",
   "work": {
    "arxiv_id": "2109.03774",
    "doi": "10.1017/pan.2023.26",
    "title": "Dyadic Clustering in International Relations",
    "url": "https://pmaronow.github.io/llm-audit/works/P032/"
   },
   "work_id": "P032"
  },
  {
   "before_review": null,
   "class": "error",
   "date_modified": "2026-10-25",
   "date_published": "2026-10-25",
   "evidence_type": "exact_counterexample",
   "exhibits": [
    {
     "alt": "Crop of five lines of page 192. A red box marks the words 'Three studies' at the start of the sentence 'Three studies employ at least one model that has fixed effects for both members of the dyad under consideration', which carries the footnote mark 10.",
     "caption": "Section 4, p. 192 (PDF p. 7). The marked count includes Shelef (2016), whose reanalyzed models have no fixed effect for either dyad member.",
     "url": "https://pmaronow.github.io/llm-audit/works/P032/exhibits/P032-N006.png"
    },
    {
     "alt": "The whole of Table A.4, Reanalysis for Models with Fixed Effects for both Dyad Members, with three rows. A red box marks the second row: Shelef (2016), 9 KEVs, 0.89, 0.00, 0.00, 0.11, Avg. SER 1.07. The other rows are Carter and Poast (2020) and Bermeo and Leblang (2015).",
     "caption": "Supplementary Table A.4, p. A4 (PDF p. 4 of the supplement). The marked row is computed from models with region-by-decade indicators only.",
     "url": "https://pmaronow.github.io/llm-audit/works/P032/exhibits/P032-N006-b.png"
    },
    {
     "alt": "Crop of footnote 10 on page 192, between the last line of footnote 9 and the first line of footnote 11. A red box marks the words 'three papers' at the end of the sentence 'Supplementary Table A.4 shows the results of applying DCRSEs to the KEVs in these three papers'.",
     "caption": "Footnote 10, p. 192 (PDF p. 7), which repeats the count.",
     "url": "https://pmaronow.github.io/llm-audit/works/P032/exhibits/P032-N006-c.png"
    }
   ],
   "formal_release": null,
   "formal_statements": [],
   "headline": "The nine reanalyzed models of Shelef (2016) have region-by-decade indicators and no fixed effect for either dyad member; two studies, not three, have a model with fixed effects for both members of the dyad, and the Shelef row does not belong in Supplementary Table A.4.",
   "id": "P032-N006",
   "location": "Section 4, p. 192 (PDF p. 7), sentence beginning “Three studies employ”, and footnote 10; Supplementary Table A.4, row Shelef (2016), p. A4 (PDF p. 4 of the supplement)",
   "pdf_page": 7,
   "printed_page": "192",
   "reaches": [],
   "related_entries": [],
   "revisions": [],
   "same_defect_as": [],
   "severity": "Minor",
   "subject": "paper",
   "target_ids": [],
   "text": {
    "as_printed": "P.~192: ``\\hl{Three} studies employ at least one model that has fixed effects for both members of the dyad under consideration.''\n\nFootnote 10, p.~192: ``Supplementary Table A.4 shows the results of applying DCRSEs to the KEVs in these \\hl{three} papers.''\n\nSupplementary Table A.4, p.~A4:\n\n\\begin{audittable}{lrrrrrr}{Table A.4: Reanalysis for Models with Fixed Effects for both Dyad Members}\nStudy & KEVs & Sig.$\\to$Sig. & Sig.$\\to$Insig. & Insig.$\\to$Sig. & Insig.$\\to$Insig. & Avg.~SER \\\\\nCarter and Poast (2020) & 8 & 0.00 & 0.38 & 0.50 & 0.12 & 1.10 \\\\\n\\hl{Shelef (2016)} & 9 & 0.89 & 0.00 & 0.00 & 0.11 & 1.07 \\\\\nBermeo and Leblang (2015) & 1 & 1.00 & 0.00 & 0.00 & 0.00 & 2.13 \\\\\n\\end{audittable}",
    "corrected": "P.~192: ``\\hl{Two} studies employ at least one \\hl{reanalyzed} model that has fixed effects for both members of the dyad under consideration.''\n\nFootnote 10: ``Supplementary Table A.4 shows the results of applying DCRSEs to the KEVs in these \\hl{two} papers.''\n\nSupplementary Table A.4 keeps its title and the rows Carter and Poast (2020) and Bermeo and Leblang (2015). The row Shelef (2016) is removed, and \\texttt{shelef2016\\_FE} is removed from \\texttt{FE\\_papers} in \\texttt{3\\_reanalysis\\_merge.R} (lines 824--828).",
    "evidence": "The evidence is an exact check on the data of the replication files. Observations 3 and 7 of the Shelef data file are in the estimation sample of all nine models and have the same level, 7, of \\texttt{regionfe\\_region\\_decade}. Their members are $(255,315)$ and $(315,260)$, with the losing state first. Let $w$ be the vector with $+1$ on observation 3, $-1$ on observation 7 and $0$ elsewhere. Then $w$ is orthogonal to every indicator of \\texttt{regionfe\\_region\\_decade}. Its inner product with the indicator of losing state 255 is $1$, and the same holds for the indicator of gaining state 315 and for the indicator that state 255 is either member. This implies that none of these three indicators is a linear combination of the region-by-decade indicators. The other regressors cannot supply the member effects either. In the three groups of models (Tables 3, 4 and 5 of the study) the design matrix has rank at most 34, 31 and 33. The indicators of the losing and of the gaining states have ranks 114 and 114, 105 and 104, and 83 and 83.",
    "problem": "Each of the nine Shelef regressions behind this row has one set of indicators, \\texttt{i.regionfe\\_region\\_decade}, and no indicators for the state that loses territory (\\texttt{loseccode}) or for the state that gains it (\\texttt{gainccode}). The first of them reads\n\n\\texttt{reg midpost homelandclaim priormid coethnicity oil\\_gas capital\\_distance\\_log dyaddem allydummy cincrat i.regionfe\\_region\\_decade if colony2==0, cluster(dyadid4)}\n\nThe options \\texttt{dm1(loseccode)} and \\texttt{dm2(gainccode)} of the DCR command name the dyad members for the variance and add no regressors. Region-by-decade indicators do not contain the member effects. These models are not models with fixed effects for both members of the dyad, and the subgroup that p.~192 and footnote 10 describe has two studies.",
    "what_survives": "The numbers of the Shelef row are those of the nine models as fitted. I did not recompute them, and no error in them is shown. Shelef (2016) stays in the primary analysis of 22 studies, and Table 5 and Supplementary Tables A.1 and A.2 do not change. What changes is the subgroup with fixed effects for both members. It has two studies and 9 KEVs ($8+1$), not three studies and 18. The article draws no conclusion from this subgroup."
   },
   "url": "https://pmaronow.github.io/llm-audit/works/P032/#P032-N006",
   "work": {
    "arxiv_id": "2109.03774",
    "doi": "10.1017/pan.2023.26",
    "title": "Dyadic Clustering in International Relations",
    "url": "https://pmaronow.github.io/llm-audit/works/P032/"
   },
   "work_id": "P032"
  },
  {
   "before_review": null,
   "class": "clarity_note",
   "date_modified": "2026-10-25",
   "date_published": "2026-10-25",
   "evidence_type": "exact_counterexample",
   "exhibits": [
    {
     "alt": "Crop of footnotes 12, 13 and 14 at the foot of page 193. A red outline marks the second sentence of footnote 13: The SER can therefore be interpreted as the inflation (or deflation) of the original standard error introduced by inter-dyad dependencies.",
     "caption": "p. 193 (PDF p. 8), footnotes 12–14. The marked sentence of footnote 13 attributes the whole ratio to inter-dyad dependencies.",
     "url": "https://pmaronow.github.io/llm-audit/works/P032/exhibits/P032-N007.png"
    }
   ],
   "formal_release": null,
   "formal_statements": [],
   "headline": "A SER different from one need not come from inter-dyad dependence alone: the DCRSE receives no small-sample correction, while the original standard error keeps the finite-sample factors of its software.",
   "id": "P032-N007",
   "location": "Section 4, pp. 192–193 (PDF pp. 7–8), sentence beginning “Also, for the purposes of our primary reanalysis”; Section 4.1, p. 193 (PDF p. 8), definition of the SER and footnote 13",
   "pdf_page": 7,
   "printed_page": "192–193",
   "reaches": [],
   "related_entries": [],
   "revisions": [],
   "same_defect_as": [],
   "severity": null,
   "subject": "paper",
   "target_ids": [],
   "text": {
    "as_printed": "\\emph{pp.~192--193.} Also, for the purposes of our primary reanalysis, there are no small-sample corrections made to \\hl{our standard error estimates}. Finite-sample corrections would inflate our standard error estimates to account for increased sampling variability, and thus might paint an overly pessimistic picture of the original literature.\n\n\\emph{p.~193.} We compute a standard error ratio (SER) for all KEVs, which is the DCRSE divided by the standard error produced using the original variance estimation strategy.\n\n\\emph{p.~193, footnote 13.} For example, if the original model clustered standard errors on repeated dyads, the SER is a ratio of DCR standard error to repeated dyad clustered standard error. The SER can therefore be interpreted as the inflation (or deflation) of the original standard error \\hl{introduced by inter-dyad dependencies}.",
    "corrected": "\\emph{pp.~192--193.} Also, for the purposes of the primary reanalysis, no final small-sample correction is made to \\hl{the DCR standard error estimates; the original standard errors keep the finite-sample adjustments returned by the replication software}.\n\n\\emph{p.~193, footnote 13.} For example, if the original model clustered standard errors on repeated dyads, the SER is a ratio of DCR standard error to repeated dyad clustered standard error. The SER therefore measures the inflation (or deflation) of the original standard error under DCR re-estimation; \\hl{it reflects the additional inter-dyad covariance terms and any difference in finite-sample adjustment between the two standard errors}.",
    "intended_meaning": "The phrase ``our standard error estimates'' refers to the DCRSEs, which receive no final small-sample correction in the primary reanalysis. The SER is computed as defined, and the comparison with the original standard errors is the one the paper intends. The denominator is the standard error that the replication software returns, and it keeps that software's finite-sample factors. In the nine least-squares models of Shelef (2016), the clustered variance of the original fit carries the factor $q=\\{G/(G-1)\\}\\{(n-1)/(n-k)\\}$ for $n$ observations, $G$ clusters and design rank $k$, while the DCR variance is constructed from components with their finite-sample factors removed. If $R$ denotes the published ratio, then the ratio with no factor on either side is $\\sqrt{q}\\,R$, and the published ratio is the smaller of the two since $q>1$. For Shelef (2016) the mean of $R$ is $1.071$, as in Supplementary Table A.2, and the mean of $\\sqrt{q}\\,R$ is $1.149$. An exact example shows that the factor alone can move the ratio. Suppose that each of the six dyads among four members has one observation, that the fit has an intercept only, and that the outcomes are $(1,0,0,0,0,-1)$ on the dyads $(1,2),(1,3),(1,4),(2,3),(2,4),(3,4)$. The two nonzero residuals lie on disjoint dyads. Then both variances without factors equal $1/18$ and the original variance with $q=6/5$ is $1/15$, and I obtain $\\sqrt{5/6}\\approx 0.913$ for the SER. No revised average over the 22 studies has been computed, and the reported ratios stand as defined."
   },
   "url": "https://pmaronow.github.io/llm-audit/works/P032/#P032-N007",
   "work": {
    "arxiv_id": "2109.03774",
    "doi": "10.1017/pan.2023.26",
    "title": "Dyadic Clustering in International Relations",
    "url": "https://pmaronow.github.io/llm-audit/works/P032/"
   },
   "work_id": "P032"
  },
  {
   "before_review": null,
   "class": "error",
   "date_modified": "2026-10-25",
   "date_published": "2026-10-25",
   "evidence_type": "complete_derivation",
   "exhibits": [
    {
     "alt": "Crop of the first four lines of the Data Availability Statement. A red outline marks the words: command for Stata (version 15 or higher). The next line is the command git clone git@github.com:jscarlson/stata-dcr.git.",
     "caption": "p. 196 (PDF p. 11), Data Availability Statement. The marked words give Stata 15 as the minimum version for the dcr command.",
     "url": "https://pmaronow.github.io/llm-audit/works/P032/exhibits/P032-N010.png"
    }
   ],
   "formal_release": null,
   "formal_statements": [],
   "headline": "The stated minimum of Stata 15 does not hold for the conditional-logit path of the dcr command, because the supplied nclogit program requires Stata 16.1 or higher.",
   "id": "P032-N010",
   "location": "Data Availability Statement, p. 196 (PDF p. 11); the same sentence in the Supplementary Appendix, “Statistical Programming Suite”, p. A1 (PDF p. 1)",
   "pdf_page": 11,
   "printed_page": "196",
   "reaches": [],
   "related_entries": [],
   "revisions": [],
   "same_defect_as": [],
   "severity": "Minor",
   "subject": "paper",
   "target_ids": [],
   "text": {
    "as_printed": "\\emph{p.~196 and Supplementary Appendix, p.~A1.} To access the source code for the \\texttt{dcr} command for Stata (\\hl{version 15 or higher}), clone its GitHub repository:\n\n\\emph{\\texttt{nclogit.ado}, lines 1--2.}\n\n\\texttt{program nclogit, eclass}\n\n\\texttt{version 16.1}",
    "corrected": "\\emph{p.~196 and Supplementary Appendix, p.~A1.} To access the source code for the \\texttt{dcr} command for Stata (\\hl{the \\texttt{dcr} wrapper declares version 15; the supplied \\texttt{nclogit} conditional-logit path requires version 16.1 or higher}), clone its GitHub repository:",
    "evidence": "The evidence is a reading of the source of \\texttt{dcr.ado} and of \\texttt{nclogit.ado}, whose two released copies are identical, together with the rule for Stata's \\texttt{version} command. Stata was not run.",
    "problem": "The program \\texttt{nclogit}, supplied with \\texttt{dcr} for conditional-logit models, begins with the statement \\texttt{version 16.1}, which is executed before any argument is read. Stata 15 and 15.1 cannot run a program that requests a later version. Every call of \\texttt{dcr nclogit} stops at that statement, although \\texttt{dcr.ado} itself declares version 15. The replication uses this path for three models, one of Weisiger and Yarhi-Milo (2015) and two of Kinne (2018).",
    "what_survives": "Results produced with Stata/MP 17.0, the version named in the replication README, are unaffected, and no estimate, table or figure changes. The other estimator paths of \\texttt{dcr} are not shown to fail on Stata 15."
   },
   "url": "https://pmaronow.github.io/llm-audit/works/P032/#P032-N010",
   "work": {
    "arxiv_id": "2109.03774",
    "doi": "10.1017/pan.2023.26",
    "title": "Dyadic Clustering in International Relations",
    "url": "https://pmaronow.github.io/llm-audit/works/P032/"
   },
   "work_id": "P032"
  },
  {
   "before_review": null,
   "class": "error",
   "date_modified": "2026-10-25",
   "date_published": "2026-10-25",
   "evidence_type": "recalculation_from_source",
   "exhibits": [
    {
     "alt": "The title 'Table A.1: Dyadic Data Summary Statistics, Study Level' and the header row 'Study, Observations, Data Start Year, Data End Year, Number of Unique Dyads', then a dashed grey rule, then seven rows from Pratt (2018) to Weisiger and Yarhi-Milo (2015) and the note below the table. The row 'Schneider and Tobin (2020)' reads 4760, 1976, 2009, 756, and a red box surrounds 4760.",
     "caption": "Supplementary Table A.1, supplement p. A2: the title and header, the last seven rows and the note, with the fifteen rows between them left out at the dashed rule. The mark is on the number of observations for Schneider and Tobin (2020).",
     "url": "https://pmaronow.github.io/llm-audit/works/P032/exhibits/P032-N011.png"
    }
   ],
   "formal_release": null,
   "formal_statements": [],
   "headline": "The number of observations for Schneider and Tobin (2020) in Supplementary Table A.1 is 952, not 4760, and the 756 dyads of that row are directed donor–recipient pairs.",
   "id": "P032-N011",
   "location": "Supplementary Table A.1, row “Schneider and Tobin (2020)”, supplement p. A2 (PDF p. 2 of the Supplementary Appendix)",
   "pdf_page": 2,
   "printed_page": "A2",
   "reaches": [],
   "related_entries": [],
   "revisions": [],
   "same_defect_as": [],
   "severity": "Minor",
   "subject": "paper",
   "target_ids": [],
   "text": {
    "as_printed": "Table A.1: Dyadic Data Summary Statistics, Study Level. The columns are Study, Observations, Data Start Year, Data End Year and Number of Unique Dyads, and the row reads:\n\nSchneider and Tobin (2020), \\hl{4760}, 1976, 2009, 756.\n\nNote: summary statistics for each study computed using data from a representative (usually the first) reanalyzed model, as analytic samples and data often vary by model.",
    "corrected": "Schneider and Tobin (2020), \\hl{952}, 1976, 2009, 756.\n\n\\hl{For Schneider and Tobin (2020), 756 counts directed donor--recipient pairs. Ignoring direction, there are 741 pairs, six of which pair a country with itself.}",
    "evidence": "The evidence is a recalculation from the replication files. The data file has 4624 rows, of which 952 satisfy the condition \\texttt{g7==1} of the three models. Each of these is a distinct donor--recipient--year, and the years run from 1976 to 2009. The 96 saved $p$-values that use a $t$ distribution (two columns for each of 16 coefficients in three models) are reproduced with $n=952$ and 936 degrees of freedom to within $2.8\\times10^{-16}$, and not with $n=4760$. The 952 observations contain 756 distinct ordered pairs and 741 unordered pairs: 15 pairs of countries occur in both orders, and six of the 741 pair a country with itself. The code that filled the summary workbook is not in the replication files, and how the entry 4760 was produced cannot be traced.",
    "problem": "The note to the table says that the statistics come from a representative reanalyzed model. The three reanalyzed models of this study are fitted to 952 donor--recipient--year observations. The printed 4760 equals $5\\times952$, and the code in the replication files requests five imputations. The entry has the size of five completed copies of the sample and does not count the observations once. The entry 756 is the number of directed donor--recipient pairs among the 952 observations. With direction ignored, as in the clustering of the reanalysis (p.~192), there are 741 pairs, and the table does not say which convention it uses.",
    "what_survives": "The correction changes this row of Table A.1 and the corresponding cells of the summary workbook in the replication files. The years 1976 and 2009 are correct, and 756 is correct as a count of directed pairs. The estimates, standard errors, standard error ratios and significance comparisons are computed from the model outputs and do not use these two columns."
   },
   "url": "https://pmaronow.github.io/llm-audit/works/P032/#P032-N011",
   "work": {
    "arxiv_id": "2109.03774",
    "doi": "10.1017/pan.2023.26",
    "title": "Dyadic Clustering in International Relations",
    "url": "https://pmaronow.github.io/llm-audit/works/P032/"
   },
   "work_id": "P032"
  },
  {
   "before_review": null,
   "class": "error",
   "date_modified": "2026-10-25",
   "date_published": "2026-10-25",
   "evidence_type": "exact_counterexample",
   "exhibits": [
    {
     "alt": "A listing of Stata code with line numbers. Line 1375 of 1_reanalysis_stata.do is a call 'dcr logit bilateral_bailout ...' that wraps over six rows; red outlines surround 'dofundo(asylike)' and 'prefix(mi estimate, post:)' in its options. Below, lines 125 to 127 of dcr.ado run the prefixed command with vce(cluster did), line 145 reads 'matrix vrep = e(V)', lines 153 to 155 set 'scalar unadjust = ((N_did - 1)/N_did)' when dofundo is asylike, and line 157 reads 'matrix vcov = -1*unadjust*vrep', with a red outline around 'unadjust*vrep'.",
     "caption": "Source code of the replication files, not a page of the article: 1_reanalysis_stata.do, line 1375, and stata-dcr/dcr.ado, lines 125–127, 145 and 153–157. The outlines mark the option that removes the finite-sample correction, the multiple-imputation prefix, and the product of the factor with the matrix returned under that prefix.",
     "url": "https://pmaronow.github.io/llm-audit/works/P032/exhibits/P032-N012.png"
    },
    {
     "alt": "The title 'Table A.2: Primary Results, Study Level' and the header row 'Study, Subfield, Secondary Subfield, Primary Relationship Tested, KEVs, Sig. to Sig., Sig. to Insig., Insig. to Sig., Insig. to Insig., Avg. SER', then a dashed grey rule, then the rows from Pratt (2018) to Weisiger and Yarhi-Milo (2015) and the row 'Average-of-Averages (= ISFW)'. A red box surrounds the row 'Schneider and Tobin (2020), IPE, International finance, Domestic spillovers and international bailout, 18, 0.333, 0, 0.056, 0.611, 0.999'.",
     "caption": "Supplementary Table A.2, supplement p. A3: the title and header, the last seven study rows and the row of averages, with the fifteen rows between them left out at the dashed rule. The marked row holds the results that pass through this code. No entry of the row is shown to be wrong.",
     "url": "https://pmaronow.github.io/llm-audit/works/P032/exhibits/P032-N012-tableA2.png"
    }
   ],
   "formal_release": null,
   "formal_statements": [
    {
     "id": "P032-T8",
     "url": "https://pmaronow.github.io/llm-audit/works/P032/#P032-T8"
    },
    {
     "id": "P032-T9",
     "url": "https://pmaronow.github.io/llm-audit/works/P032/#P032-T9"
    }
   ],
   "headline": "For the one study fitted to multiply imputed data, the code removes the finite-sample corrections from covariance matrices that are already pooled over the imputations, which also rescales the between-imputation component; the result need not equal the DCR covariance computed within each imputation and then pooled.",
   "id": "P032-N012",
   "location": "Replication files: 1_reanalysis_stata.do, lines 1375, 1380 and 1385, and stata-dcr/dcr.ado, lines 125–238. The results enter Supplementary Table A.2, row “Schneider and Tobin (2020)”, supplement p. A3 (PDF p. 3 of the Supplementary Appendix). The article prints no statement on multiple imputation.",
   "pdf_page": null,
   "printed_page": null,
   "reaches": [],
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   "severity": "Minor",
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   "target_ids": [
    "P032-T8",
    "P032-T9"
   ],
   "text": {
    "as_printed": "Line 1375 of \\texttt{1\\_reanalysis\\_stata.do}, with the regressors and the output path left out:\n\n\\texttt{dcr logit bilateral\\_bailout} \\ldots\\ \\texttt{if g7==1, dm1(cc) dm2(dc)} \\texttt{crse(donor\\_country) psd} \\hl{\\texttt{dofundo(asylike)}} \\texttt{syntax(vce) xlsxpath(}\\ldots\\texttt{)} \\hl{\\texttt{prefix(mi estimate, post:)}}\n\nLines 145, 154 and 157 of \\texttt{stata-dcr/dcr.ado}, for the repeated-dyad component:\n\n\\texttt{matrix vrep = e(V)}\n\n\\texttt{scalar unadjust = ((N\\_did - 1)/N\\_did)}\n\n\\texttt{matrix vcov = -1*}\\hl{\\texttt{unadjust*vrep}}\n\nThe 18 key explanatory variables (KEVs) of the three models give the row of Supplementary Table A.2: Schneider and Tobin (2020), 18, 0.333, 0, 0.056, 0.611, 0.999.",
    "corrected": "For a model fitted to $M$ imputed data sets, the DCR covariance is computed as follows.\n\n\\begin{enumerate}\n\\item In each imputation $m$, compute each component covariance and remove its finite-sample correction with the factor of that component, taken from the sample and the clusters of that imputation. If \\hl{no same-country dyad appears in more than one observation}, form\n\\[\n\\widehat V_r^{(m)}=\\sum_{i=1}^{K}\\widehat V_{c,i}^{(m)}-\\widehat V_D^{(m)}-(K-2)\\widehat V_0^{(m)}.\n\\]\nIf \\hl{a same-country dyad is observed more than once}, compute $\\widehat V_r^{(m)}$ by \\hl{the direct sandwich sum over observation pairs whose dyads share a member}, including an observation paired with itself.\n\\item Pool by Rubin's rules, with the between-imputation term entering \\hl{once and with coefficient 1}:\n\\[\n\\widehat V_r=\\frac{1}{M}\\sum_{m=1}^{M}\\widehat V_r^{(m)}+\\hl{\\Bigl(1+\\frac{1}{M}\\Bigr)B}.\n\\]\n\\item Apply the eigenvalue adjustment of footnote 3, where it is used, at a stated point of this sequence.\n\\end{enumerate}\n\nWhen \\hl{no same-country dyad appears in more than one observation}, the sample, the clusters and the factors are the same in every imputation and no eigenvalue adjustment is active, the result equals the matrix that the code now computes plus \\hl{$(1-c)(1+1/M)B$}, with $c$ as in the evidence above. The option \\texttt{dofundo(none)} is not a repair, since it leaves the finite-sample corrections in the within-imputation components. The three models and the summaries that use them are then to be recomputed.",
    "evidence": "The evidence is a derivation from the code and an exact counterexample. No Stata run was made, and the three models were not refitted. Let $K$ be the number of dyad members (the $N$ of p.~191), $n$ the number of observations and $M$ the number of imputations. The decomposition has one component for each member $i$, the repeated-dyad component $D$ and the heteroskedasticity-consistent component $0$, with signed weights $s_i=1$, $s_D=-1$ and $s_0=-(K-2)$, so that $\\sum_js_j=1$. For component $j$, let $\\bar U_j$ be the average over the imputations of the within-imputation covariance without finite-sample correction, and let $a_j$ be the factor by which the command multiplies. The corrected within-imputation covariance is the uncorrected one divided by $a_j$. Suppose that no same-country dyad appears in more than one observation, that the sample, the clusters and the factors are the same in every imputation and that no eigenvalue adjustment is made. Since the fitted coefficients do not depend on the clustering, every component has the same $Q=(1+1/M)B$. The matrix returned for component $j$ is $T_j=\\bar U_j/a_j+Q$, and the command computes\n\\[\nT_{\\mathrm{code}}=\\sum_js_ja_jT_j=\\sum_js_j\\bar U_j+cQ,\\qquad c=\\sum_js_ja_j.\n\\]\nThe DCR covariance computed within each imputation and then pooled is $T_*=\\sum_js_j\\bar U_j+Q$. Subtracting, I find $T_{\\mathrm{code}}-T_*=(c-1)(1+1/M)B$. With the option \\texttt{dofundo(asylike)}, the factors are $a_i=1-1/G_i$, $a_D=1-1/G_D$ and $a_0=1-1/n$, where $G_i$ and $G_D$ are the numbers of clusters in the component for member $i$ and in the repeated-dyad component. Substituting these factors into the definition of $c$, I obtain\n\\[\nc-1=-\\sum_{i=1}^{K}\\frac{1}{G_i}+\\frac{1}{G_D}+\\frac{K-2}{n},\n\\]\nwhich is not zero in general.\n\nThe decomposition includes each observation paired with itself; it omits only pairs of different observations on a common same-country dyad. In the source data, I count each of the six same-country dyads just once among the 952 observations with \\texttt{g7==1}, so none contributes such an omission.\n\nFor the counterexample, I consider 24 observations, four on each of the six dyads among four members, an intercept-only logit and five imputations. Three imputations complete the data to 12 successes and two to 18. Then $K=4$, $n=24$, $G_D=6$ and $G_i=13$ for every member, and $c=4(12/13)-5/6-2(23/24)=49/52$. The fitted intercepts are $0$ and $\\log3$, and I have $B=3(\\log3)^2/10$ and $Q=9(\\log3)^2/25$. The DCR variances within the two kinds of imputation are $2/9$ and $8/81$, with average $14/81$. A direct computation gives $T_*=14/81+(9/25)(\\log3)^2$ and $T_{\\mathrm{code}}=14/81+(441/1300)(\\log3)^2$, and the difference is $-(27/1300)(\\log3)^2<0$. All the variances are positive, and the eigenvalue adjustment is not active.",
    "problem": "Each of the three calls runs every component of the decomposition on p.~191 under the prefix \\texttt{mi estimate, post:}. Under the standard behaviour of this prefix, the matrix \\texttt{e(V)} returned for a component is the covariance pooled over the five imputations by Rubin's rules: the average of the within-imputation covariances plus $(1+1/M)B$, where $B$ is the between-imputation covariance of the coefficients and $M=5$. The command then multiplies the returned matrix by the factor that removes the finite-sample correction of that component. This factor belongs to the within-imputation covariance only. Applied to the pooled matrix, it also multiplies $(1+1/M)B$. The components carry different factors, and the between-imputation term enters the result with a coefficient $c$ that differs from 1 in general. The DCR covariance computed within each imputation and then pooled has coefficient 1. The decomposition on p.~191 is correct for one complete data set if no same-country dyad appears in more than one observation.",
    "what_survives": "The decomposition on p.~191 is unaffected. The reanalyses of the other 21 studies do not use this multiple-imputation prefix. The logit coefficients of the three models are unaffected, since the covariance estimator does not change them. The DCR covariance of the three models depends on this code, and with it the DCRSEs, the standard error ratios and the DCR $p$-values of the 18 KEVs in the row of Supplementary Table A.2. These enter the 2020, IPE and overall rows of Table 5 and Figures 1--3, and the same calls are repeated in the small-sample reanalysis behind Supplementary Table A.5. No value in these tables is shown to be wrong. The size and direction of the difference for the three models have not been computed, because the replication files do not keep the coefficient and covariance matrices of each imputation."
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   "work": {
    "arxiv_id": "2109.03774",
    "doi": "10.1017/pan.2023.26",
    "title": "Dyadic Clustering in International Relations",
    "url": "https://pmaronow.github.io/llm-audit/works/P032/"
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     "body": "<p>p. 191 display and component definitions; dcr.ado lines 108–119 and 163–190. Common scores give the exact decomposition and exhaustive coefficient count, while subject-id substitution and arbitrary residual scaling have the stated discrepancies.</p>",
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     "body": "<p>p. 196 Section 4.1 and Supplementary Table A.2, p. A3. Exact recovery from the printed proportions gives four studies at the weak half-loss threshold and three at the strict threshold, together with all stated neighboring counts.</p>",
     "headline": "Section 4.1 (p. 196), ‘Three studies see half or more of their KEVs become insignificant at the 5% level upon reanalysis’, corrected against Supplementary Table A.2: four studies have a Sig.→Insig. share of one half or more, and three have a share above one half",
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     "body": "p. 196 Section 4.1 and Supplementary Table A.2, p. A3. Exact recovery from the printed proportions gives four studies at the weak half-loss threshold and three at the strict threshold, together with all stated neighboring counts.",
     "headline": "Section 4.1 (p. 196), ‘Three studies see half or more of their KEVs become insignificant at the 5% level upon reanalysis’, corrected against Supplementary Table A.2: four studies have a Sig.→Insig. share of one half or more, and three have a share above one half",
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 "reproduction": {
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  "status": "partial",
  "targets": [
   {
    "agreement": "agrees_in_part",
    "location": "p. 193 (PDF p. 8), sample description p. 192 (PDF p. 7)",
    "method": "I recalculated all 77 printed Table 5 cells from saved study summaries, using the two R-study rows as printed. This reproduces the sample selected by the original merge; P032-E008 identifies two omitted KEVs and gives the corrected counts.",
    "status": "recalculated",
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   },
   {
    "agreement": "agrees",
    "location": "p. 194 (PDF p. 9), upper panel",
    "method": "I visually compared the published figure with the saved full-data figure in the replication files; they agree. Complete regeneration was blocked because five KEVs from one model were unavailable. Newly generated figures omit those KEVs and do not establish complete-data agreement.",
    "status": "blocked",
    "target": "Figure 1"
   },
   {
    "agreement": "agrees",
    "location": "p. 194 (PDF p. 9), lower panel",
    "method": "I visually compared the published figure with the saved full-data figure in the replication files; they agree. Complete regeneration was blocked because five KEVs from one model were unavailable. Newly generated figures omit those KEVs and do not establish complete-data agreement.",
    "status": "blocked",
    "target": "Figure 2"
   },
   {
    "agreement": "agrees",
    "location": "p. 195 (PDF p. 10)",
    "method": "I visually compared the published figure with the saved full-data figure in the replication files; they agree. Complete regeneration was blocked because five KEVs from one model were unavailable. Newly generated figures omit those KEVs and do not establish complete-data agreement.",
    "status": "blocked",
    "target": "Figure 3"
   },
   {
    "agreement": "to_rounding",
    "location": "p. 186 (PDF p. 1), abstract; p. 196 (PDF p. 11), conclusion",
    "method": "I recalculated retention using integer transition counts recovered from the printed study summaries, with equal study weighting: about $67.03\\%$, which rounds to the reported $67\\%$.",
    "status": "recalculated",
    "target": "Abstract significance retention"
   },
   {
    "agreement": "agrees_in_part",
    "location": "supplement p. A3 (supplement PDF p. 3); main p. 196 (PDF p. 11)",
    "method": "I compared 21 complete study rows from the partial replication merge with Table A.2; they agree to rounding, and the remaining study is incomplete. The reported range and the counts 18 and seven agree, but four studies, rather than the stated three, lose significance for at least half their KEVs (P032-E002).",
    "status": "recalculated",
    "target": "Table A.2 and study-level in-text results"
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 "summary": "The article asks how much dyadic clustering affects inference in international relations. It reanalyzes 22 dyadic studies from \\emph{International Organization} (January 2014 to January 2020) with dyadic clustering robust standard errors (DCRSEs), and reports that DCRSEs average 1.74 times the original standard errors and that 67\\% of significant estimates remain significant. 16 entries are classified as errors (5 Moderate, 11 Minor, none Major or Critical), and 3 are clarity notes. The most consequential is \\fid{P032-N004}: for 13 survival models behind two study rows, the Stata command does not subtract the matrix $\\widehat V_0$ that the decomposition on p.~191 requires, and those rows have not been recomputed.",
 "what_was_checked": "I examined the article (13 pages), its Supplementary Appendix (5 pages) and the replication files. These are the Dataverse package, with its code, the outputs that it saves for each model and data from six of the 22 studies, and the R and Stata packages \\texttt{dcr}. The list below states what was examined and held up. It is not a finding that the rest of the article is correct.\n\n\\begin{itemize}\n\\item \\emph{The decomposition.} The identity $\\widehat V_r=\\sum_{i=1}^{N}\\widehat V_{c,i}-\\widehat V_D-(N-2)\\widehat V_0$ on p.~191 holds by a counting argument, and exactly on small designs with repeated and reversed dyads. It requires that each dyad has two distinct members, that $N$ is the number of dyad members, and that $\\widehat V_{c,i}$ clusters the observations containing member $i$ and treats every other observation as its own cluster (see \\fid{P032-N005} and \\fid{P032-N003}). In the 35 models checked against a direct computation, the decomposition equals the direct sum over pairs of observations whose dyads share a member: 9 regressions of Shelef (2016), 21 probits of Copelovitch and Putnam (2014) and 5 models of Pratt (2018).\n\\item \\emph{The software on the models re-estimated.} For the two Stata studies among these, the saved DCRSEs and original standard errors agree with a separate computation in R to at least five significant digits, and the R function reproduces a direct computation for the five models of Pratt (2018). Three models of Arel-Bundock (2017) were also refitted from the replication data, and their study row agrees with Table A.2 after rounding. The factors that remove the finite-sample corrections are right for \\texttt{regress} and for the maximum-likelihood commands. The copies of \\texttt{dcr.ado} and \\texttt{nclogit.ado} in the Dataverse package and in the Stata package are identical. Other parts of the two packages are the subject of \\fid{P032-E004}, \\fid{P032-E005}, \\fid{P032-E006}, \\fid{P032-N004} and \\fid{P032-N010}.\n\\item \\emph{Table 5 and Supplementary Table A.2.} I rebuilt the 20 rows of Table A.2 for the studies analyzed in Stata and its average row (0.455, 0.224, 0.046, 0.276, 1.743) from the saved outputs. With the two rows for the studies analyzed in R taken as printed, every cell of Table 5 follows, and its 77 numeric cells agree after rounding. In all 7,782 saved coefficient rows, the standard error ratio and the normal $p$-values agree with the saved standard errors to within $3.4\\times10^{-16}$. This checks the arithmetic and not the fitted models.\n\\item \\emph{The text against the tables.} The values 1.74, 0.22 and 0.05 agree with Table 5, and the 67\\% equals $0.455/(0.455+0.224)$. The range 0.90 to 4.16, the 18 of 22 studies whose standard error ratio is above 1 on average and the 7 of 22 with no loss of significance agree with Supplementary Table A.2, and the subfield statements on pp.~193 and 196 agree with Table 5. The counts agree with the code: 174 models, 24 models in three studies without robust or clustered standard errors, and 20 state-dyad and 2 IO-dyad studies. Inverse study frequency weighting is an average of study averages, as footnote 14 says. The number of studies in which half or more of the key explanatory variables (KEVs) become insignificant is the subject of \\fid{P032-E002}, and the count of 691 KEVs is the subject of \\fid{P032-E008}.\n\\item \\emph{Section 2 and Tables 1--4.} The variance algebra of Section 2.1 and the dependence patterns of Table 1 are correct, and the zero patterns of Tables 2--4 are right for the labels as printed (\\fid{P032-N003}).\n\\item \\emph{The supplementary tables.} The rows of Table A.1 for Copelovitch and Putnam (2014), Powell (2015), Pratt (2018) and Shelef (2016) equal the estimation samples in the data. The row for Schneider and Tobin (2020) is the subject of \\fid{P032-N011}. The rows of Table A.4 are the primary results for the models listed (\\fid{P032-N006} concerns the classification of one study). The ``All'' row of Table A.5 is consistent with its year and subfield rows, I rebuilt the year rows for 2014, 2015, 2016, 2019 and 2020, and the table is close to Table 5 (1.75 against 1.74). The correction of the original standard errors in that table is the subject of \\fid{P032-E011}.\n\\item \\emph{Figures and other points.} The published Figures 1--3 agree on visual comparison with the figures saved in the replication files (the note to Figure 3 is the subject of \\fid{P032-E010}). The scripts for the small-sample reanalysis differ from the primary ones only in the option for the correction, the output paths and the reference distribution. The ordered probit used in place of a probit for one model of Colgan (2014) leaves the slopes and their standard errors unchanged. I read all supplementary pages, footnotes and references.\n\\end{itemize}\n\nThe following were not checked, or could not be.\n\n\\begin{itemize}\n\\item Stata was not available. I examined the Stata command by reading it and by reproducing its saved output in R for two studies, and ran none of the Stata models.\n\\item Twenty data files of the Dataverse package, those larger than 5 MB or inside nested archives, were not read in the initial examination. With Arel-Bundock (2017) also refitted in the separate reproduction, data from 16 of the 22 studies were not examined, and those studies were checked only through the saved outputs.\n\\item The following were not re-estimated: one model of Pratt (2018) fitted with \\texttt{arm::bayesglm}, the multinomial logit of Powell (2015) and the multiple-imputation logit of Schneider and Tobin (2020). The two R-study rows of Table A.2 were taken as printed for the complete Table 5 recalculation; the Pratt (2018) row could not be fully checked by refitting.\n\\item The 22 reanalyzed articles were not available. The published standard errors and significance markers could not be compared with the re-estimated ones, and whether four estimates of Carter and Poast (2020) were published as significant at the 5\\% level could not be determined. The search that returned 70 studies and the exclusions from it could not be examined.\n\\item The statement on p.~196 that the failure to compute DCRSEs ``does not appear to have led to systematically false substantive conclusions'' was not assessed. The arithmetic of retained significance behind it holds, and the sources contain nothing on whether the conclusions of the 22 studies are true.\n\\item No published correction to the article is among the sources, and I did not search for one elsewhere.\n\\end{itemize}",
 "work": {
  "arxiv_id": "2109.03774",
  "audit_complete": true,
  "authors": [
   "Jacob Carlson",
   "Trevor Incerti",
   "P. M. Aronow"
  ],
  "category": "Articles - Empirics",
  "citation": "Jacob Carlson, Trevor Incerti, and P. M. Aronow (2024). Dyadic Clustering in International Relations. Political Analysis 32(2):186–198.",
  "doi": "10.1017/pan.2023.26",
  "edition": {
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   "sha256": "69493a1fc4a2706339bfaeb01af78aae7fa76cce7bb3f5f990468edf88d94a15",
   "source_url": "https://doi.org/10.1017/pan.2023.26",
   "venue": "Political Analysis",
   "year": "2024"
  },
  "id": "P032",
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  "title": "Dyadic Clustering in International Relations",
  "type": "Journal article",
  "url": "https://pmaronow.github.io/llm-audit/works/P032/",
  "venue": "Political Analysis",
  "year": "2024"
 }
}
